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Sample GSM172848 Query DataSets for GSM172848
Status Public on Nov 02, 2007
Title PCCl3_24h_1
Sample type SAGE
Anchor NlaIII
Tag Count 21216
Tag Length 10
 
Source name PCCl3 thyroid follicular cell, 24h
Organism Rattus norvegicus
Characteristics Rat thyroid cell
Biomaterial provider James A. Fagin
Growth protocol Cell were cultured in Ham's F12 medium supplemented with 5% calf serum and the four hormones: 1mU/ml bovine TSH, 10ug/ml insulin, 5ug/ml transferrin and 10nM hydrocortisone.
Extracted molecule polyA RNA
Extraction protocol Polyadenylated RNA was isolated using magnetic beads provided by I-SAGE Kit (Invitrogen)
 
Description PCCl3 cells were cultured without any additional treatment
 
Submission date Mar 02, 2007
Last update date Nov 19, 2008
Contact name Edna Teruko Kimura
E-mail(s) etkimura@usp.br
Phone 55-11-30917304
Fax 55-11-30917402
Organization name USP - University of Sao Paulo
Department ICB - Cell and Developmental Biology
Lab Thyroid Molecular Biology
Street address Av Prof Lineu Prestes 1524 sala 414
City Sao Paulo
State/province SP
ZIP/Postal code 05508000
Country Brazil
 
Platform ID GPL23
Series (1)
GSE7174 Differential gene expression analysis of iodide treated rat thyroid follicular cell line PCCl3

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
ATAACACATA 622 29317.50
ATACTGACAC 424 19984.92
GTGGCTCACA 380 17911.01
GATCAGTCAT 217 10228.13
TCAGGCTGCC 201 9473.98
GATGCCCCCC 163 7682.88
AATCGGAGGC 135 6363.12
CTAGTCTTTG 113 5326.17
AGCCATCCCT 104 4901.96
ACGTCTCAAA 103 4854.83
TGACTATTAA 81 3817.87
GAATGACCTG 80 3770.74
GGATTTGGCC 71 3346.53
GCACGGGAAT 68 3205.13
TCCAATAAAG 68 3205.13
GGTAGCCACT 59 2780.92
GGCAAGCCCC 58 2733.79
TCAGCTGCCT 58 2733.79
AGGAGGCTAC 57 2686.65
GCCTAATGTA 53 2498.11

Total number of rows: 9963

Table truncated, full table size 186 Kbytes.




Supplementary data files not provided

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