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GEO accession:
Sample GSM172854
Query DataSets for GSM172854
Status
Public on Mar 01, 2008
Title
ken_103_medullo
Sample type
RNA
Source name
mouse medulloblastoma
Organism
Mus musculus
Characteristics
mixed background C57 and 129
Extracted molecule
total RNA
Extraction protocol
Roche Trizol
Label
Standard Affymetrix
Label protocol
Standard Affymetrix
Hybridization protocol
Standard Affymetrix
Scan protocol
Standard Affymetrix
Description
Not applicable
Data processing
MAS5.0
Submission date
Mar 02, 2007
Last update date
Aug 28, 2018
Contact name
David Finkelstein
E-mail(s)
david.finkelstein@stjude.org
Phone
9014953931
Organization name
St Jude Children's Research Hospital
Department
Computational Biology
Street address
332 N. Lauderdale St.
City
Memphis
State/province
TN
ZIP/Postal code
38105
Country
USA
Platform ID
GPL1261
Series (1)
GSE7212
Medulloblastomas derived from Cxcr6 mutant mice respond to treatment with a Smoothened inhibitor
Relations
Reanalyzed by
GSE119085
Data table header descriptions
ID_REF
VALUE
signal
ABS_CALL
presence absence
DETECTION P-VALUE
call p value
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
640.309
P
0.000662269
AFFX-BioB-M_at
1076.38
P
7.00668e-05
AFFX-BioB-3_at
668.081
P
0.000146581
AFFX-BioC-5_at
2145.55
P
5.16732e-05
AFFX-BioC-3_at
2440.87
P
4.42873e-05
AFFX-BioDn-5_at
4045.57
P
4.42873e-05
AFFX-BioDn-3_at
9818.39
P
0.00010954
AFFX-CreX-5_at
22318.1
P
5.16732e-05
AFFX-CreX-3_at
24936.1
P
4.42873e-05
AFFX-DapX-5_at
17.0054
A
0.340661
AFFX-DapX-M_at
29.0259
A
0.631562
AFFX-DapX-3_at
40.2576
A
0.737173
AFFX-LysX-5_at
58.459
M
0.050229
AFFX-LysX-M_at
16.7498
A
0.699394
AFFX-LysX-3_at
16.2329
A
0.425962
AFFX-PheX-5_at
9.47713
A
0.737173
AFFX-PheX-M_at
9.33188
A
0.737173
AFFX-PheX-3_at
24.4263
A
0.645559
AFFX-ThrX-5_at
10.2201
A
0.712257
AFFX-ThrX-M_at
15.6869
A
0.659339
Total number of rows:
45101
Table truncated, full table size
1373 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM172854.CEL.gz
3.9 Mb
(ftp)
(http)
CEL
GSM172854.CHP.gz
238.4 Kb
(ftp)
(http)
CHP
Processed data provided as supplementary file
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