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Sample GSM172855 Query DataSets for GSM172855
Status Public on Mar 01, 2008
Title hmk_109_P5_cerebellum
Sample type RNA
 
Source name mouse brain
Organism Mus musculus
Characteristics C57BL6, wild type
Extracted molecule total RNA
Extraction protocol Roche Trizol
Label Standard Affymetrix
Label protocol Standard Affymetrix
 
Hybridization protocol Standard Affymetrix
Scan protocol Standard Affymetrix
Description Not applicable
Data processing MAS5.0
 
Submission date Mar 02, 2007
Last update date Aug 28, 2018
Contact name David Finkelstein
E-mail(s) david.finkelstein@stjude.org
Phone 9014953931
Organization name St Jude Children's Research Hospital
Department Computational Biology
Street address 332 N. Lauderdale St.
City Memphis
State/province TN
ZIP/Postal code 38105
Country USA
 
Platform ID GPL1261
Series (1)
GSE7212 Medulloblastomas derived from Cxcr6 mutant mice respond to treatment with a Smoothened inhibitor
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE signal
ABS_CALL presence absence call
DETECTION P-VALUE call p value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1526.67 P 0.000340305
AFFX-BioB-M_at 2292.48 P 5.16732e-05
AFFX-BioB-3_at 1492.22 P 4.42873e-05
AFFX-BioC-5_at 3651.49 P 6.02111e-05
AFFX-BioC-3_at 4481.4 P 4.42873e-05
AFFX-BioDn-5_at 7043.98 P 4.42873e-05
AFFX-BioDn-3_at 14998.9 P 8.14279e-05
AFFX-CreX-5_at 40083.2 P 5.16732e-05
AFFX-CreX-3_at 41102.3 P 4.42873e-05
AFFX-DapX-5_at 17.0994 A 0.699394
AFFX-DapX-M_at 19.9657 A 0.749204
AFFX-DapX-3_at 9.72863 A 0.995983
AFFX-LysX-5_at 12.6663 A 0.794268
AFFX-LysX-M_at 15.8504 A 0.852061
AFFX-LysX-3_at 94.2696 M 0.0629293
AFFX-PheX-5_at 7.23762 A 0.860518
AFFX-PheX-M_at 8.68098 A 0.969024
AFFX-PheX-3_at 46.5419 A 0.617401
AFFX-ThrX-5_at 49.9501 A 0.699394
AFFX-ThrX-M_at 21.4389 A 0.794268

Total number of rows: 45101

Table truncated, full table size 1367 Kbytes.




Supplementary file Size Download File type/resource
GSM172855.CEL.gz 3.6 Mb (ftp)(http) CEL
GSM172855.CHP.gz 239.2 Kb (ftp)(http) CHP
Processed data provided as supplementary file

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