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GEO accession:
Sample GSM172855
Query DataSets for GSM172855
Status
Public on Mar 01, 2008
Title
hmk_109_P5_cerebellum
Sample type
RNA
Source name
mouse brain
Organism
Mus musculus
Characteristics
C57BL6, wild type
Extracted molecule
total RNA
Extraction protocol
Roche Trizol
Label
Standard Affymetrix
Label protocol
Standard Affymetrix
Hybridization protocol
Standard Affymetrix
Scan protocol
Standard Affymetrix
Description
Not applicable
Data processing
MAS5.0
Submission date
Mar 02, 2007
Last update date
Aug 28, 2018
Contact name
David Finkelstein
E-mail(s)
david.finkelstein@stjude.org
Phone
9014953931
Organization name
St Jude Children's Research Hospital
Department
Computational Biology
Street address
332 N. Lauderdale St.
City
Memphis
State/province
TN
ZIP/Postal code
38105
Country
USA
Platform ID
GPL1261
Series (1)
GSE7212
Medulloblastomas derived from Cxcr6 mutant mice respond to treatment with a Smoothened inhibitor
Relations
Reanalyzed by
GSE119085
Data table header descriptions
ID_REF
VALUE
signal
ABS_CALL
presence absence call
DETECTION P-VALUE
call p value
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
1526.67
P
0.000340305
AFFX-BioB-M_at
2292.48
P
5.16732e-05
AFFX-BioB-3_at
1492.22
P
4.42873e-05
AFFX-BioC-5_at
3651.49
P
6.02111e-05
AFFX-BioC-3_at
4481.4
P
4.42873e-05
AFFX-BioDn-5_at
7043.98
P
4.42873e-05
AFFX-BioDn-3_at
14998.9
P
8.14279e-05
AFFX-CreX-5_at
40083.2
P
5.16732e-05
AFFX-CreX-3_at
41102.3
P
4.42873e-05
AFFX-DapX-5_at
17.0994
A
0.699394
AFFX-DapX-M_at
19.9657
A
0.749204
AFFX-DapX-3_at
9.72863
A
0.995983
AFFX-LysX-5_at
12.6663
A
0.794268
AFFX-LysX-M_at
15.8504
A
0.852061
AFFX-LysX-3_at
94.2696
M
0.0629293
AFFX-PheX-5_at
7.23762
A
0.860518
AFFX-PheX-M_at
8.68098
A
0.969024
AFFX-PheX-3_at
46.5419
A
0.617401
AFFX-ThrX-5_at
49.9501
A
0.699394
AFFX-ThrX-M_at
21.4389
A
0.794268
Total number of rows:
45101
Table truncated, full table size
1367 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM172855.CEL.gz
3.6 Mb
(ftp)
(http)
CEL
GSM172855.CHP.gz
239.2 Kb
(ftp)
(http)
CHP
Processed data provided as supplementary file
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