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Sample GSM174757 Query DataSets for GSM174757
Status Public on Apr 10, 2007
Title renal_vesicle_wild_type_1
Sample type RNA
 
Source name renal vesicle from E12.5 wild type kidney
Organism Mus musculus
Characteristics strain CD-1 mouse. RV was isolated by laser capture microdissection.
Biomaterial provider Potter Laboratory
Treatment protocol Was prepared according to GUDMAP Potter protocols (GUDMAP.ORG)
Extracted molecule total RNA
Extraction protocol According to GUDMAP Potter laboratory protocols (GUDMAP.ORG)
Label biotin
Label protocol Used two round Epicentre kit, as per Potter GUDMAP.ORG protocols
 
Hybridization protocol Standard Affymetrix hybridization protocols, using five micrograms of target
Scan protocol Standard Affymetrix scan protocols.
Description No other informatin required.
Data processing Expression values generated with GCOS affymetrix software using all probe sets scaling factor 1500
 
Submission date Mar 12, 2007
Last update date Apr 09, 2007
Contact name Steven Potter
E-mail(s) steve.potter@cchmc.org
Organization name Children's hospital Medical Center
Department Developmental Biology
Lab Potter
Street address 3333 Burnet Ave.
City Cincinnati
State/province OH
ZIP/Postal code 45229
Country USA
 
Platform ID GPL1261
Series (1)
GSE7257 Laser capture-microarray analysis of Lim1 mutant kidney development.

Data table header descriptions
ID_REF
VALUE expression level
ABS_CALL absent/present call
DETECTION P-VALUE P-value for expression

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 6476.49 P 4.42873e-05
AFFX-BioB-M_at 11336.6 P 4.42873e-05
AFFX-BioB-3_at 7288.21 P 4.42873e-05
AFFX-BioC-5_at 20669 P 4.42873e-05
AFFX-BioC-3_at 19167.4 P 4.42873e-05
AFFX-BioDn-5_at 36887.5 P 4.42873e-05
AFFX-BioDn-3_at 62012.5 P 4.42873e-05
AFFX-CreX-5_at 132904 P 5.16732e-05
AFFX-CreX-3_at 138239 P 4.42873e-05
AFFX-DapX-5_at 73.6791 A 0.340661
AFFX-DapX-M_at 35.8341 A 0.699457
AFFX-DapX-3_at 54.8832 A 0.631562
AFFX-LysX-5_at 5.63413 A 0.99238
AFFX-LysX-M_at 65.7616 A 0.48511
AFFX-LysX-3_at 3.01755 A 0.976071
AFFX-PheX-5_at 5.61739 A 0.969024
AFFX-PheX-M_at 11.3023 A 0.804734
AFFX-PheX-3_at 31.6398 A 0.5
AFFX-ThrX-5_at 158.701 M 0.0584438
AFFX-ThrX-M_at 57.5857 A 0.287743

Total number of rows: 45101

Table truncated, full table size 1368 Kbytes.




Supplementary file Size Download File type/resource
GSM174757.CEL.gz 3.5 Mb (ftp)(http) CEL
GSM174757.CHP.gz 5.2 Mb (ftp)(http) CHP
Processed data provided as supplementary file

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