NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM174761 Query DataSets for GSM174761
Status Public on Apr 10, 2007
Title renal_vesicle_wild_type_5
Sample type RNA
 
Source name renal vesicle from E12.5 wild type kidney
Organism Mus musculus
Characteristics strain CD-1
Biomaterial provider Potter Laboratory
Treatment protocol Was prepared according to GUDMAP Potter protocols (GUDMAP.ORG)
Extracted molecule total RNA
Extraction protocol According to GUDMAP Potter laboratory protocols (GUDMAP.ORG)
Label biotin
Label protocol Used two round Epicentre kit, as per Potter GUDMAP.ORG protocols
 
Hybridization protocol Standard Affymetrix hybridization protocols, using five micrograms of target
Scan protocol Standard Affymetrix scan protocols.
Description No other informatin required.
Data processing Expression values generated with GCOS affymetrix software using all probe sets scaling factor 1500
 
Submission date Mar 12, 2007
Last update date Apr 09, 2007
Contact name Steven Potter
E-mail(s) steve.potter@cchmc.org
Organization name Children's hospital Medical Center
Department Developmental Biology
Lab Potter
Street address 3333 Burnet Ave.
City Cincinnati
State/province OH
ZIP/Postal code 45229
Country USA
 
Platform ID GPL1261
Series (1)
GSE7257 Laser capture-microarray analysis of Lim1 mutant kidney development.

Data table header descriptions
ID_REF
VALUE expression level
ABS_CALL absent/present call
DETECTION P-VALUE p-value for expression

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 2008.92 P 6.02111e-05
AFFX-BioB-M_at 3319.52 P 4.42873e-05
AFFX-BioB-3_at 1822.16 P 5.16732e-05
AFFX-BioC-5_at 4837.67 P 4.42873e-05
AFFX-BioC-3_at 6358.28 P 4.42873e-05
AFFX-BioDn-5_at 9792.97 P 4.42873e-05
AFFX-BioDn-3_at 21487 P 5.16732e-05
AFFX-CreX-5_at 54525.9 P 5.16732e-05
AFFX-CreX-3_at 62349.3 P 4.42873e-05
AFFX-DapX-5_at 46.1005 A 0.131361
AFFX-DapX-M_at 14.6424 A 0.574038
AFFX-DapX-3_at 47.7291 A 0.300591
AFFX-LysX-5_at 29.3739 A 0.39692
AFFX-LysX-M_at 14.1391 A 0.672921
AFFX-LysX-3_at 10.9864 A 0.659339
AFFX-PheX-5_at 9.47257 A 0.876428
AFFX-PheX-M_at 2.11607 A 0.963431
AFFX-PheX-3_at 102.472 A 0.116113
AFFX-ThrX-5_at 44.9827 A 0.41138
AFFX-ThrX-M_at 21.5265 A 0.60308

Total number of rows: 45101

Table truncated, full table size 1374 Kbytes.




Supplementary file Size Download File type/resource
GSM174761.CEL.gz 3.5 Mb (ftp)(http) CEL
GSM174761.CHP.gz 5.1 Mb (ftp)(http) CHP
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap