NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM174763 Query DataSets for GSM174763
Status Public on Apr 10, 2007
Title renal_vesicle_Lim1_mutant_2
Sample type RNA
 
Source name renal vesicle from E12.5 Lim1 mutant kidney
Organism Mus musculus
Characteristics Renal vesicles from Lim1 mutant E12.5 embryos isolated by laser capture microdissection.
Biomaterial provider Potter Laboratory
Treatment protocol Was prepared according to GUDMAP Potter protocols (GUDMAP.ORG)
Extracted molecule total RNA
Extraction protocol According to GUDMAP Potter laboratory protocols (GUDMAP.ORG)
Label biotin
Label protocol Used two round Epicentre kit, as per Potter GUDMAP.ORG protocols
 
Hybridization protocol Standard Affymetrix hybridization protocols, using five micrograms of target
Scan protocol Standard Affymetrix scan protocols.
Description No other informatin required.
Data processing Expression values generated with GCOS affymetrix software using all probe sets scaling factor 1500
 
Submission date Mar 12, 2007
Last update date Aug 28, 2018
Contact name Steven Potter
E-mail(s) steve.potter@cchmc.org
Organization name Children's hospital Medical Center
Department Developmental Biology
Lab Potter
Street address 3333 Burnet Ave.
City Cincinnati
State/province OH
ZIP/Postal code 45229
Country USA
 
Platform ID GPL1261
Series (1)
GSE7257 Laser capture-microarray analysis of Lim1 mutant kidney development.
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE expression level
ABS_CALL absent/present call
DETECTION P-VALUE p-value for expression

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 2928.64 P 5.16732e-05
AFFX-BioB-M_at 4971.59 P 4.42873e-05
AFFX-BioB-3_at 3173.35 P 5.16732e-05
AFFX-BioC-5_at 9987.34 P 5.16732e-05
AFFX-BioC-3_at 10432.2 P 4.42873e-05
AFFX-BioDn-5_at 17664.6 P 4.42873e-05
AFFX-BioDn-3_at 35135.7 P 4.42873e-05
AFFX-CreX-5_at 82900 P 5.16732e-05
AFFX-CreX-3_at 89907.3 P 4.42873e-05
AFFX-DapX-5_at 8.29019 A 0.783476
AFFX-DapX-M_at 14.9262 A 0.783476
AFFX-DapX-3_at 49.9864 A 0.470241
AFFX-LysX-5_at 4.48328 A 0.904352
AFFX-LysX-M_at 89.2862 A 0.41138
AFFX-LysX-3_at 14.1868 A 0.824672
AFFX-PheX-5_at 5.23725 A 0.963443
AFFX-PheX-M_at 8.04541 A 0.897835
AFFX-PheX-3_at 112.969 A 0.250796
AFFX-ThrX-5_at 135.58 A 0.165861
AFFX-ThrX-M_at 50.7475 A 0.41138

Total number of rows: 45101

Table truncated, full table size 1371 Kbytes.




Supplementary file Size Download File type/resource
GSM174763.CEL.gz 3.7 Mb (ftp)(http) CEL
GSM174763.CHP.gz 5.2 Mb (ftp)(http) CHP
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap