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Sample GSM174764 Query DataSets for GSM174764
Status Public on Apr 10, 2007
Title renal_vesicle_Lim1_mutant_3
Sample type RNA
 
Source name renal vesicle from E12.5 Lim1 mutant kidney
Organism Mus musculus
Characteristics E12.5 Lim1 mutant renal vesicles isolated by laser capture microdissection.
Biomaterial provider Potter Laboratory
Treatment protocol Was prepared according to GUDMAP Potter protocols (GUDMAP.ORG)
Extracted molecule total RNA
Extraction protocol According to GUDMAP Potter laboratory protocols (GUDMAP.ORG)
Label biotin
Label protocol Used two round Epicentre kit, as per Potter GUDMAP.ORG protocols
 
Hybridization protocol Standard Affymetrix hybridization protocols, using five micrograms of target
Scan protocol Standard Affymetrix scan protocols.
Description No other informatin required.
Data processing Expression values generated with GCOS affymetrix software using all probe sets scaling factor 1500
 
Submission date Mar 12, 2007
Last update date Aug 28, 2018
Contact name Steven Potter
E-mail(s) steve.potter@cchmc.org
Organization name Children's hospital Medical Center
Department Developmental Biology
Lab Potter
Street address 3333 Burnet Ave.
City Cincinnati
State/province OH
ZIP/Postal code 45229
Country USA
 
Platform ID GPL1261
Series (1)
GSE7257 Laser capture-microarray analysis of Lim1 mutant kidney development.
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE expression level
ABS_CALL absent/present call
DETECTION P-VALUE p-value for expression

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 3102.69 P 5.16732e-05
AFFX-BioB-M_at 5815.57 P 4.42873e-05
AFFX-BioB-3_at 3735.27 P 4.42873e-05
AFFX-BioC-5_at 10831.9 P 4.42873e-05
AFFX-BioC-3_at 11592.5 P 4.42873e-05
AFFX-BioDn-5_at 21733.2 P 4.42873e-05
AFFX-BioDn-3_at 38651.5 P 4.42873e-05
AFFX-CreX-5_at 90743 P 5.16732e-05
AFFX-CreX-3_at 100145 P 4.42873e-05
AFFX-DapX-5_at 32.2346 A 0.300606
AFFX-DapX-M_at 49.0634 A 0.470241
AFFX-DapX-3_at 68.6274 A 0.227636
AFFX-LysX-5_at 1.52495 A 0.973889
AFFX-LysX-M_at 11.2745 A 0.699409
AFFX-LysX-3_at 45.04 A 0.227636
AFFX-PheX-5_at 6.09901 A 0.749204
AFFX-PheX-M_at 4.98831 A 0.883908
AFFX-PheX-3_at 45.8326 A 0.425962
AFFX-ThrX-5_at 12.0263 A 0.852061
AFFX-ThrX-M_at 28.1314 A 0.425962

Total number of rows: 45101

Table truncated, full table size 1373 Kbytes.




Supplementary file Size Download File type/resource
GSM174764.CEL.gz 3.6 Mb (ftp)(http) CEL
GSM174764.CHP.gz 5.1 Mb (ftp)(http) CHP
Processed data provided as supplementary file

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