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Sample GSM1792 Query DataSets for GSM1792
Status Public on Jun 27, 2002
Title E6:_U937_ mock_4h
Sample type RNA
 
Channel 1
Source name U937/AGS ref, 2uL, 1st strand label
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name E6:_U937_ mock_4h, 1st strand label
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Pathogen
Subcategory: Salmonella
E6:_U937_ mock_4h
Scanning Software: GenePix
Software version: Pro
Lot batch = shai063
 
Submission date Jun 18, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL183
Series (1)
GSE503 Macrophages infected with Salmonella

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log10 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 301 290 4156 7630 7123 531 507 446 6268 6714 .97 0 .593 1.658 98 100 .583 .663 1.714 1.508 1.671 280 52 52 60 65 73 .593
2 305 302 3848 5604 5109 518 495 436 4496 4931 .95 0 .224 1.266 100 100 .753 .856 1.328 1.168 1.283 272 52 53 61 80 88 .224
3 289 284 2111 3489 2993 512 496 436 2634 3070 .92 0 .319 1.373 98 96 .705 .802 1.418 1.248 1.362 282 52 53 61 96 104 .319
4 294 289 642 1066 598 501 468 412 526 938 .72 0 -.287 .978 100 90 1.074 1.22 .931 .82 .8 212 32 53 60 111 118 -.287
5 284 280 933 1962 1460 517 502 442 1285 1726 .89 0 .461 1.609 100 98 .639 .726 1.565 1.377 1.457 274 52 53 61 126 134 .461
6 283 273 4364 10170 9662 532 508 447 8502 8949 .96 0 .962 2.238 100 100 .452 .513 2.214 1.948 2.063 266 52 53 61 141 149 .962
7 306 271 2539 3045 2519 565 526 463 2217 2679 .92 0 -.196 .951 100 100 1.008 1.145 .992 .873 .943 212 32 53 60 155 162 -.196
8 296 284 1015 1728 1218 549 510 449 1072 1521 .75 0 .079 1.324 96 90 .833 .947 1.2 1.056 .762 282 52 53 61 171 179 .079
9 302 289 22898 16600 16103 524 497 437 14170 14607 .98 0 -.692 .691 100 100 1.422 1.616 .703 .619 .685 279 52 53 61 186 194 -.692
10 305 288 840 966 453 526 513 451 399 850 .61 0 -1.075 .511 96 71 1.854 2.107 .539 .475 .458 219 32 53 60 200 207 -1.075
11 309 304 978 35201 34704 515 497 437 30537 30975 .93 0 4.965 36.121 98 100 .028 .032 35.485 31.224 33.24 292 52 53 61 216 224 4.965
12 324 313 14879 2492 2000 521 492 433 1760 2193 .92 0 -3.08 .135 100 98 7.44 8.455 .134 .118 .129 275 52 53 61 231 239 -3.08
13 305 295 2539 4057 3553 521 504 443 3126 3570 .93 0 .3 1.459 100 100 .715 .812 1.399 1.231 1.288 264 52 53 61 245 253 .3
14 293 291 16336 17330 16822 501 508 447 14802 15249 .97 0 -.142 1.027 100 100 .971 1.104 1.03 .906 1.028 328 52 52 61 259 268 -.142
15 289 290 1787 1434 929 507 505 444 817 1262 .81 0 -1.128 .496 100 98 1.924 2.186 .52 .457 .475 264 52 53 61 275 283 -1.128
16 291 286 2415 20120 19634 509 486 428 17277 17704 .96 0 2.839 8.205 100 100 .123 .14 8.13 7.154 7.72 274 52 53 61 290 298 2.839
17 288 281 12418 42036 41530 534 506 445 36544 36989 .97 0 1.557 3.265 100 100 .299 .34 3.344 2.943 3.276 264 52 53 61 305 313 1.557
18 302 288 915 11072 10566 540 506 445 9297 9743 .95 0 3.345 11.53 98 100 .087 .098 11.548 10.161 10.828 282 52 53 61 319 327 3.345
19 294 282 7379 8254 7742 529 512 451 6812 7263 .95 0 -.115 .977 100 100 .953 1.083 1.049 .923 1.011 284 52 53 61 334 342 -.115
20 297 291 2454 5242 4729 530 513 451 4161 4613 .94 0 .762 1.941 100 100 .519 .59 1.927 1.696 1.799 274 52 53 61 349 357 .762

Total number of rows: 24192

Table truncated, full table size 3005 Kbytes.




Supplementary data files not provided
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