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Sample GSM1795 Query DataSets for GSM1795
Status Public on Jun 27, 2002
Title E6:_U937_ mock_2h
Sample type RNA
 
Channel 1
Source name U937/AGS ref, 2uL, 1st strand label
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name E6:_U937_ mock_2h, 1st strand label
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Pathogen
Subcategory: Salmonella
E6:_U937_ mock_2h
Scanning Software: GenePix
Software version: Pro
Lot batch = shai066
 
Submission date Jun 18, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL183
Series (1)
GSE503 Macrophages infected with Salmonella

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log10 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 427 424 4349 5100 4583 542 517 668 5924 6593 .94 0 .446 1.031 100 100 .949 .734 1.054 1.362 1.012 296 52 46 54 51 59 .446
2 446 441 4427 3302 2765 554 537 694 3574 4268 .95 0 -.309 .586 100 98 1.601 1.239 .625 .807 .6 274 52 46 54 66 74 -.309
3 425 415 2028 2433 1902 555 531 686 2459 3145 .95 0 .278 .907 96 96 1.066 .825 .938 1.212 .909 277 52 46 54 81 89 .278
4 422 405 399 718 167 568 551 712 216 928 .44 0 -.886 .588 93 37 2.389 1.848 .419 .541 .393 166 32 48 54 96 102 -.886
5 399 386 523 1039 512 556 527 681 662 1343 .66 0 .34 .983 92 80 1.021 .79 .979 1.265 .782 346 52 45 54 110 119 .34
6 403 396 3748 5477 4936 556 541 699 6381 7080 .97 0 .768 1.325 100 100 .759 .587 1.317 1.702 1.288 312 52 45 54 124 133 .768
7 395 381 980 1457 923 555 534 690 1193 1883 .81 0 .284 .985 96 94 1.062 .821 .942 1.217 .792 266 52 45 53 140 148 .284
8 398 384 420 905 355 565 550 711 459 1170 .58 0 .128 .931 92 69 1.183 .915 .845 1.093 .708 264 52 46 54 155 163 .128
9 407 387 16961 10126 9572 566 554 716 12373 13089 .97 0 -.455 .567 100 100 1.772 1.371 .564 .73 .545 285 52 46 54 170 178 -.455
10 420 412 577 861 320 562 541 699 414 1113 .5 0 -.48 .619 98 63 1.803 1.395 .555 .717 .452 274 52 46 54 185 193 -.48
11 361 340 888 19237 18692 575 545 704 24162 24867 .91 0 4.766 21.641 94 100 .048 .037 21.05 27.21 19.393 275 52 45 53 200 208 4.766
12 352 305 17242 2133 1575 611 558 721 2036 2757 .83 0 -3.082 .085 100 96 10.947 8.469 .091 .118 .09 312 52 45 54 214 223 -3.082
13 931 313 3232 4672 4091 689 581 751 5288 6039 .37 0 .71 1.333 21 96 .79 .611 1.266 1.636 .146 286 52 45 53 230 238 .71
14 553 323 23635 18781 18195 765 586 757 23520 24277 .95 0 -.007 .74 100 100 1.299 1.005 .77 .995 .764 231 32 46 53 245 252 -.007
15 647 331 2293 1462 858 909 604 781 1109 1890 .8 0 -1.048 .368 75 1 2.672 2.067 .374 .484 1.22 292 52 45 53 261 269 -1.048
16 690 333 3583 25658 25022 1037 636 822 32345 33167 .88 0 3.174 7.096 96 100 .143 .111 6.984 9.027 5.781 285 52 45 53 276 284 3.174
17 428 300 18778 41618 41031 783 587 759 53039 53798 .98 0 1.498 2.124 100 100 .458 .354 2.185 2.825 2.124 284 52 45 53 291 299 1.498
18 684 295 1064 14121 13543 853 578 747 17506 18254 .31 0 4.04 13 0 100 .079 .061 12.728 16.453 .838 230 32 45 52 306 313 4.04
19 322 298 10516 9384 8789 637 595 769 11361 12130 .96 0 .112 .821 100 100 1.196 .926 .836 1.08 .783 308 52 44 52 322 330 .112
20 366 316 1377 3384 2777 659 607 785 3590 4374 .62 0 1.382 1.448 96 93 .496 .384 2.017 2.607 1.872 218 32 44 51 336 343 1.382

Total number of rows: 24192

Table truncated, full table size 3031 Kbytes.




Supplementary data files not provided
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