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Sample GSM1798 Query DataSets for GSM1798
Status Public on Jun 27, 2002
Title E6:_U937_phoP_1h
Sample type RNA
 
Channel 1
Source name U937/AGS ref, 2uL, 1st strand label
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name E6:_U937_phoP_1h, 1st strand label
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Pathogen
Subcategory: Salmonella
E6:_U937_phoP_1h
Scanning Software: GenePix
Software version: Pro
Lot batch = shai069
 
Submission date Jun 18, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL183
Series (1)
GSE503 Macrophages infected with Salmonella

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log10 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 347 341 5845 11873 11282 614 591 345 6593 6938 .95 0 .174 1.914 100 100 .518 .887 1.93 1.128 1.753 297 52 37 45 69 77 .174
2 377 364 4524 6794 6106 718 688 402 3568 3970 .95 0 -.342 1.376 100 98 .741 1.268 1.35 .789 1.343 275 52 36 44 85 93 -.342
3 369 360 3323 5671 4987 706 684 400 2914 3314 .96 0 -.189 1.52 100 100 .666 1.14 1.501 .877 1.434 282 52 37 45 100 108 -.189
4 393 369 646 1271 563 744 708 414 329 743 .32 0 -.974 .893 86 69 1.147 1.964 .872 .509 .817 284 52 37 45 116 124 -.974
5 378 366 1221 2955 2237 741 718 420 1307 1727 .89 0 .098 1.795 96 94 .546 .934 1.832 1.071 1.791 272 52 37 45 130 138 .098
6 353 352 6087 15270 14595 683 675 394 8528 8923 .96 0 .487 2.392 100 100 .417 .714 2.398 1.401 2.338 272 52 37 45 146 154 .487
7 349 347 1892 3269 2594 702 675 394 1516 1910 .9 0 -.32 1.324 100 98 .729 1.248 1.371 .801 1.244 264 52 37 45 160 168 -.32
8 357 348 1104 2814 2165 707 649 379 1265 1644 .91 0 .197 1.872 98 96 .51 .873 1.961 1.146 1.775 275 52 37 45 175 183 .197
9 387 386 42916 52823 52106 763 717 419 30448 30867 .96 0 -.495 1.145 100 100 .824 1.409 1.214 .709 1.128 276 52 38 46 191 199 -.495
10 499 385 1734 2804 2054 986 750 438 1200 1638 .96 0 -.531 1.341 81 43 .844 1.445 1.185 .692 1.781 213 32 37 44 205 212 -.531
11 465 374 1806 60651 59909 931 742 434 35007 35441 .9 0 4.277 34.519 80 100 .03 .052 33.172 19.384 27.548 285 52 38 46 220 228 4.277
12 470 359 24016 6103 5399 804 704 411 3155 3566 .92 0 -2.928 .22 98 100 4.448 7.612 .225 .131 .207 276 52 38 46 235 243 -2.928
13 475 361 5994 10247 9550 772 697 407 5580 5988 .94 0 -.103 1.55 96 100 .628 1.074 1.593 .931 1.493 264 52 38 46 250 258 -.103
14 394 361 29086 37735 37041 732 694 406 21645 22050 .97 0 -.426 1.276 100 100 .785 1.344 1.273 .744 1.167 317 52 38 47 263 272 -.426
15 380 351 3031 2463 1759 721 704 411 1028 1439 .88 0 -1.56 .596 100 98 1.723 2.949 .58 .339 .54 274 52 39 47 279 287 -1.56
16 413 365 4101 45878 45160 937 718 420 26389 26808 .93 0 2.686 10.82 100 100 .091 .155 11.012 6.435 9.853 212 32 39 46 294 301 2.686
17 387 354 19679 56032 55387 764 645 377 32365 32742 .95 0 .718 2.637 100 100 .355 .608 2.815 1.645 2.444 324 52 38 47 308 317 .718
18 750 341 1017 26185 25510 1142 675 394 14907 15301 .93 0 3.874 24.896 0 100 .04 .068 25.084 14.657 22.536 306 52 39 47 324 332 3.874
19 1872 339 8738 16301 15734 2539 567 331 9194 9525 .89 -100 1.533 50 66 .555 .95 1.801 1.052 1.511 87 12 37 42 342 347 .073
20 402 357 2769 9079 8413 789 666 389 4916 5305 .94 0 .828 2.911 82 88 .329 .563 3.038 1.775 2.797 291 52 39 47 354 362 .828

Total number of rows: 24192

Table truncated, full table size 3066 Kbytes.




Supplementary data files not provided
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