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Sample GSM179979 Query DataSets for GSM179979
Status Public on Dec 01, 2007
Title Gonadal white adipose_GWAT407
Sample type RNA
 
Source name Mouse Gonadal white adipose Strain B6.C-D7Mit353
Organism Mus musculus
Characteristics B6.C-D7Mit353. Male mice at about 120 days
Extracted molecule total RNA
Extraction protocol TRIzol extraction
Label digioxigenin
Label protocol Digoxigenin labeled cRNA was prepared according to Applied Biosystems nanoamp RT-IVT protocol
 
Hybridization protocol Hybridization was performed according to Applied Biosystems Chemiluminescence Detection Kit Protocol (PN 4339627) using 10 ug fragmented cRNA
Scan protocol Image was captured using CCD camera came with AB1700 Microarray Analyzer
Description Lean congenic homozygote strain
Data processing Quantile normalization was performed
 
Submission date Apr 02, 2007
Last update date Apr 10, 2007
Contact name Yongming Sun
E-mail(s) yongming.sun@appliedbiosystems.com
Phone 650-638-6879
Organization name Applied Biosystems
Street address 850 Lincoln Center Dr
City Foster City
State/province CA
ZIP/Postal code 94404
Country USA
 
Platform ID GPL2995
Series (1)
GSE7431 Whole genome survey of the obesity model lean congenic mice B6.C-D7Mit353

Data table header descriptions
ID_REF
VALUE same as UNF_VALUE but with flagged values removed
S/N Signal-to-noise ratio. Used for probe detectability. A probe with S/N >=3 is considered detected, otherwise, it is not detected
FLAG Quantification error code. A FLAG > 5000 indicates quantification error.
UNF_VALUE Log2 transformed quantile normalized signal intensity

Data table
ID_REF VALUE S/N FLAG UNF_VALUE
297784 13.66163984 52.1 1 13.66163984
297907 -0.4 1 7.756332491
297912 11.72119106 23.1 1 11.72119106
297935 -0.1 1 7.984015786
297990 2 1 9.055381137
297993 2.8 1 8.651682049
298000 13.79333317 70.2 1 13.79333317
298038 -1.1 1 8.102930039
298121 -0.2 1 7.924073245
298130 1 1 8.780680069
298143 8.970438481 7.4 1 8.970438481
298150 10.19296529 3.2 1 10.19296529
298151 -2.3 1 7.225453963
298155 10.16877583 5 1 10.16877583
298165 10.63871657 6.3 1 10.63871657
298174 11.84257513 8.8 1 11.84257513
298188 1.7 1 8.87767399
298200 16.18472751 63.8 1 16.18472751
298246 -1.2 1 8.10378802
298248 8.531846899 3.2 1 8.531846899

Total number of rows: 32996

Table truncated, full table size 1011 Kbytes.




Supplementary file Size Download File type/resource
GSM179979.txt.gz 242.6 Kb (ftp)(http) TXT

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