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Sample GSM179985 Query DataSets for GSM179985
Status Public on Dec 01, 2007
Title Liver_L409
Sample type RNA
 
Source name Mouse Liver Strain B6.C-D7Mit353
Organism Mus musculus
Characteristics B6.C-D7Mit353. Male mice at about 120 days
Extracted molecule total RNA
Extraction protocol TRIzol extraction
Label digioxigenin
Label protocol Digoxigenin labeled cRNA was prepared according to Applied Biosystems nanoamp RT-IVT protocol
 
Hybridization protocol Hybridization was performed according to Applied Biosystems Chemiluminescence Detection Kit Protocol (PN 4339627) using 10 ug fragmented cRNA
Scan protocol Image was captured using CCD camera came with AB1700 Microarray Analyzer
Description Lean congenic homozygote strain
Data processing Quantile normalization was performed
 
Submission date Apr 02, 2007
Last update date Apr 10, 2007
Contact name Yongming Sun
E-mail(s) yongming.sun@appliedbiosystems.com
Phone 650-638-6879
Organization name Applied Biosystems
Street address 850 Lincoln Center Dr
City Foster City
State/province CA
ZIP/Postal code 94404
Country USA
 
Platform ID GPL2995
Series (1)
GSE7431 Whole genome survey of the obesity model lean congenic mice B6.C-D7Mit353

Data table header descriptions
ID_REF
VALUE same as UNF_VALUE but with flagged values removed
S/N Signal-to-noise ratio. Used for probe detectability. A probe with S/N >=3 is considered detected, otherwise, it is not detected
FLAG Quantification error code. A FLAG > 5000 indicates quantification error.
UNF_VALUE Log2 transformed quantile normalized signal intensity

Data table
ID_REF VALUE S/N FLAG UNF_VALUE
297784 14.72900281 71 1 14.72900281
297907 1.8 1 8.283315543
297912 11.03806845 10.8 1 11.03806845
297935 -1.2 1 7.585485395
297990 0 1 8.183650078
297993 -0.2 1 6.551187154
298000 13.66253021 70.9 1 13.66253021
298038 -0.2 1 8.365424355
298121 0.9 1 7.261345143
298130 0 1 9.247907385
298143 12.73067988 31.4 1 12.73067988
298150 -2.5 1 8.171920785
298151 2.9 1 10.14392565
298155 1.7 1 9.025902858
298165 1.2 1 8.569183583
298174 11.05785368 6.5 1 11.05785368
298188 -2.6 1 7.614661214
298200 16.90186286 72.9 1 16.90186286
298246 0.1 1 7.473687586
298248 0.8 1 8.09222705

Total number of rows: 32996

Table truncated, full table size 1005 Kbytes.




Supplementary file Size Download File type/resource
GSM179985.txt.gz 241.7 Kb (ftp)(http) TXT

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