NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM179988 Query DataSets for GSM179988
Status Public on Dec 01, 2007
Title Liver_Lb572
Sample type RNA
 
Source name Mouse Liver Strain C57BL/6J
Organism Mus musculus
Characteristics C57BL/6J. Male mice at about 120 days
Extracted molecule total RNA
Extraction protocol TRIzol extraction
Label digioxigenin
Label protocol Digoxigenin labeled cRNA was prepared according to Applied Biosystems nanoamp RT-IVT protocol
 
Hybridization protocol Hybridization was performed according to Applied Biosystems Chemiluminescence Detection Kit Protocol (PN 4339627) using 10 ug fragmented cRNA
Scan protocol Image was captured using CCD camera came with AB1700 Microarray Analyzer
Description Background strain
Data processing Quantile normalization was performed
 
Submission date Apr 02, 2007
Last update date Apr 10, 2007
Contact name Yongming Sun
E-mail(s) yongming.sun@appliedbiosystems.com
Phone 650-638-6879
Organization name Applied Biosystems
Street address 850 Lincoln Center Dr
City Foster City
State/province CA
ZIP/Postal code 94404
Country USA
 
Platform ID GPL2995
Series (1)
GSE7431 Whole genome survey of the obesity model lean congenic mice B6.C-D7Mit353

Data table header descriptions
ID_REF
VALUE same as UNF_VALUE but with flagged values removed
S/N Signal-to-noise ratio. Used for probe detectability. A probe with S/N >=3 is considered detected, otherwise, it is not detected
FLAG Quantification error code. A FLAG > 5000 indicates quantification error.
UNF_VALUE Log2 transformed quantile normalized signal intensity

Data table
ID_REF VALUE S/N FLAG UNF_VALUE
297784 14.48284261 51 1 14.48284261
297907 -1.5 1 8.082241612
297912 11.13422744 12.2 1 11.13422744
297935 -0.5 1 8.383610462
297990 0.4 1 9.118342145
297993 0.8 1 7.305150998
298000 13.0907897 28.1 1 13.0907897
298038 -0.7 1 8.180183867
298121 0.4 1 7.96229354
298130 0.9 1 8.925646638
298143 12.48968101 25.2 1 12.48968101
298150 9.550922358 3.4 1 9.550922358
298151 2.2 1 9.877446358
298155 1.7 1 9.139715796
298165 2.8 1 9.685665107
298174 10.88804453 3.1 1 10.88804453
298188 -0.1 1 8.664547437
298200 15.81501619 71.5 1 15.81501619
298246 2.8 1 9.522661799
298248 10.17493246 4.8 1 10.17493246

Total number of rows: 32996

Table truncated, full table size 985 Kbytes.




Supplementary file Size Download File type/resource
GSM179988.txt.gz 243.1 Kb (ftp)(http) TXT

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap