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Sample GSM179989 Query DataSets for GSM179989
Status Public on Dec 01, 2007
Title Liver_Lb573
Sample type RNA
 
Source name Mouse Liver Strain C57BL/6J
Organism Mus musculus
Characteristics C57BL/6J. Male mice at about 120 days
Extracted molecule total RNA
Extraction protocol TRIzol extraction
Label digioxigenin
Label protocol Digoxigenin labeled cRNA was prepared according to Applied Biosystems nanoamp RT-IVT protocol
 
Hybridization protocol Hybridization was performed according to Applied Biosystems Chemiluminescence Detection Kit Protocol (PN 4339627) using 10 ug fragmented cRNA
Scan protocol Image was captured using CCD camera came with AB1700 Microarray Analyzer
Description Background strain
Data processing Quantile normalization was performed
 
Submission date Apr 02, 2007
Last update date Apr 10, 2007
Contact name Yongming Sun
E-mail(s) yongming.sun@appliedbiosystems.com
Phone 650-638-6879
Organization name Applied Biosystems
Street address 850 Lincoln Center Dr
City Foster City
State/province CA
ZIP/Postal code 94404
Country USA
 
Platform ID GPL2995
Series (1)
GSE7431 Whole genome survey of the obesity model lean congenic mice B6.C-D7Mit353

Data table header descriptions
ID_REF
VALUE same as UNF_VALUE but with flagged values removed
S/N Signal-to-noise ratio. Used for probe detectability. A probe with S/N >=3 is considered detected, otherwise, it is not detected
FLAG Quantification error code. A FLAG > 5000 indicates quantification error.
UNF_VALUE Log2 transformed quantile normalized signal intensity

Data table
ID_REF VALUE S/N FLAG UNF_VALUE
297784 14.62533609 69.5 1 14.62533609
297907 -1.7 1 8.835908473
297912 11.1449957 8.3 1 11.1449957
297935 9.890781111 3.2 1 9.890781111
297990 0.7 1 8.243345796
297993 -0.5 1 6.91056449
298000 12.98152342 27.3 1 12.98152342
298038 0.1 1 7.791386305
298121 0.9 1 7.738887582
298130 -0.1 1 8.825215702
298143 12.30058268 13.1 1 12.30058268
298150 0 1 8.372681771
298151 9.30117638 3.2 1 9.30117638
298155 -0.7 1 8.814027145
298165 0.9 1 8.60296087
298174 10.86932209 3.8 1 10.86932209
298188 -0.3 1 7.846115782
298200 15.94215975 74.5 1 15.94215975
298246 1.3 1 8.475151817
298248 -0.7 1 8.474099139

Total number of rows: 32996

Table truncated, full table size 992 Kbytes.




Supplementary file Size Download File type/resource
GSM179989.txt.gz 243.7 Kb (ftp)(http) TXT

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