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Sample GSM179993 Query DataSets for GSM179993
Status Public on Dec 01, 2007
Title Gastrocnemius_Gas408
Sample type RNA
 
Source name Mouse Gastrocnemius Strain C57BL/6J
Organism Mus musculus
Characteristics C57BL/6J. Male mice at about 120 days
Extracted molecule total RNA
Extraction protocol TRIzol extraction
Label digioxigenin
Label protocol Digoxigenin labeled cRNA was prepared according to Applied Biosystems nanoamp RT-IVT protocol
 
Hybridization protocol Hybridization was performed according to Applied Biosystems Chemiluminescence Detection Kit Protocol (PN 4339627) using 10 ug fragmented cRNA
Scan protocol Image was captured using CCD camera came with AB1700 Microarray Analyzer
Description Background strain
Data processing Quantile normalization was performed
 
Submission date Apr 02, 2007
Last update date Apr 10, 2007
Contact name Yongming Sun
E-mail(s) yongming.sun@appliedbiosystems.com
Phone 650-638-6879
Organization name Applied Biosystems
Street address 850 Lincoln Center Dr
City Foster City
State/province CA
ZIP/Postal code 94404
Country USA
 
Platform ID GPL2995
Series (1)
GSE7431 Whole genome survey of the obesity model lean congenic mice B6.C-D7Mit353

Data table header descriptions
ID_REF
VALUE same as UNF_VALUE but with flagged values removed
S/N Signal-to-noise ratio. Used for probe detectability. A probe with S/N >=3 is considered detected, otherwise, it is not detected
FLAG Quantification error code. A FLAG > 5000 indicates quantification error.
UNF_VALUE Log2 transformed quantile normalized signal intensity

Data table
ID_REF VALUE S/N FLAG UNF_VALUE
297784 12.48245881 20.1 1 12.48245881
297907 1.1 1 8.16991939
297912 10.42000921 5 1 10.42000921
297935 1.5 1 9.221455074
297990 1.1 1 8.005659529
297993 1.9 1 9.057660252
298000 12.46199339 17.3 1 12.46199339
298038 -3.1 0 7.882252554
298121 0.5 1 8.65954799
298130 0.5 1 12.48612921
298143 1.6 1 9.183964786
298150 9.201781655 3.2 1 9.201781655
298151 0.6 1 7.912641809
298155 1.4 1 9.662386008
298165 11.15689741 5.3 1 11.15689741
298174 10.17939977 3.1 1 10.17939977
298188 1.6 1 8.612009164
298200 16.14575212 64.9 1 16.14575212
298246 -1 1 8.686822557
298248 -0.2 1 7.635307851

Total number of rows: 32996

Table truncated, full table size 982 Kbytes.




Supplementary file Size Download File type/resource
GSM179993.txt.gz 243.1 Kb (ftp)(http) TXT

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