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Sample GSM179994 Query DataSets for GSM179994
Status Public on Dec 01, 2007
Title Gastrocnemius_Gas615
Sample type RNA
 
Source name Mouse Gastrocnemius Strain C57BL/6J
Organism Mus musculus
Characteristics C57BL/6J. Male mice at about 120 days
Extracted molecule total RNA
Extraction protocol TRIzol extraction
Label digioxigenin
Label protocol Digoxigenin labeled cRNA was prepared according to Applied Biosystems nanoamp RT-IVT protocol
 
Hybridization protocol Hybridization was performed according to Applied Biosystems Chemiluminescence Detection Kit Protocol (PN 4339627) using 10 ug fragmented cRNA
Scan protocol Image was captured using CCD camera came with AB1700 Microarray Analyzer
Description Background strain
Data processing Quantile normalization was performed
 
Submission date Apr 02, 2007
Last update date Apr 10, 2007
Contact name Yongming Sun
E-mail(s) yongming.sun@appliedbiosystems.com
Phone 650-638-6879
Organization name Applied Biosystems
Street address 850 Lincoln Center Dr
City Foster City
State/province CA
ZIP/Postal code 94404
Country USA
 
Platform ID GPL2995
Series (1)
GSE7431 Whole genome survey of the obesity model lean congenic mice B6.C-D7Mit353

Data table header descriptions
ID_REF
VALUE same as UNF_VALUE but with flagged values removed
S/N Signal-to-noise ratio. Used for probe detectability. A probe with S/N >=3 is considered detected, otherwise, it is not detected
FLAG Quantification error code. A FLAG > 5000 indicates quantification error.
UNF_VALUE Log2 transformed quantile normalized signal intensity

Data table
ID_REF VALUE S/N FLAG UNF_VALUE
297784 13.45047167 38.6 1 13.45047167
297907 0.1 1 7.860840407
297912 10.85541846 10.6 1 10.85541846
297935 -0.2 1 7.880028103
297990 1 1 8.353670067
297993 -1.3 1 7.494268397
298000 12.81025894 40.5 1 12.81025894
298038 2 1 9.387815521
298121 -0.9 1 8.575656724
298130 11.64754295 3.5 1 11.64754295
298143 2.4 1 9.772961215
298150 -0.4 1 8.69066561
298151 1.4 1 8.148529341
298155 -0.2 1 8.583750406
298165 11.08871742 4.9 1 11.08871742
298174 10.34274231 4.5 1 10.34274231
298188 1.3 1 8.574438745
298200 16.36173837 100.9 1 16.36173837
298246 9.467835942 3.7 1 9.467835942
298248 1.2 1 8.140321306

Total number of rows: 32996

Table truncated, full table size 997 Kbytes.




Supplementary file Size Download File type/resource
GSM179994.txt.gz 245.7 Kb (ftp)(http) TXT

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