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Sample GSM179998 Query DataSets for GSM179998
Status Public on Dec 01, 2007
Title Gonadal white adipose_GWAT411
Sample type RNA
 
Source name Mouse Gonadal white adipose Strain C57BL/6J
Organism Mus musculus
Characteristics C57BL/6J. Male mice at about 120 days
Extracted molecule total RNA
Extraction protocol TRIzol extraction
Label digioxigenin
Label protocol Digoxigenin labeled cRNA was prepared according to Applied Biosystems nanoamp RT-IVT protocol
 
Hybridization protocol Hybridization was performed according to Applied Biosystems Chemiluminescence Detection Kit Protocol (PN 4339627) using 10 ug fragmented cRNA
Scan protocol Image was captured using CCD camera came with AB1700 Microarray Analyzer
Description Background strain
Data processing Quantile normalization was performed
 
Submission date Apr 02, 2007
Last update date Apr 10, 2007
Contact name Yongming Sun
E-mail(s) yongming.sun@appliedbiosystems.com
Phone 650-638-6879
Organization name Applied Biosystems
Street address 850 Lincoln Center Dr
City Foster City
State/province CA
ZIP/Postal code 94404
Country USA
 
Platform ID GPL2995
Series (1)
GSE7431 Whole genome survey of the obesity model lean congenic mice B6.C-D7Mit353

Data table header descriptions
ID_REF
VALUE same as UNF_VALUE but with flagged values removed
S/N Signal-to-noise ratio. Used for probe detectability. A probe with S/N >=3 is considered detected, otherwise, it is not detected
FLAG Quantification error code. A FLAG > 5000 indicates quantification error.
UNF_VALUE Log2 transformed quantile normalized signal intensity

Data table
ID_REF VALUE S/N FLAG UNF_VALUE
297784 14.29684049 70.4 1 14.29684049
297907 -1 1 6.613469094
297912 11.2906591 19.8 1 11.2906591
297935 9.766578124 4.6 1 9.766578124
297990 7.616232349 3.6 1 7.616232349
297993 0.8 1 7.06321274
298000 13.77555918 82.9 1 13.77555918
298038 -0.3 1 7.207255445
298121 -1.3 1 6.842169767
298130 -0.2 1 8.476629234
298143 11.40165197 29.3 1 11.40165197
298150 0.4 1 7.583283749
298151 8.393057542 3.3 1 8.393057542
298155 9.505085086 3.2 1 9.505085086
298165 11.32640746 16.4 1 11.32640746
298174 11.65272458 16.1 1 11.65272458
298188 -0.5 1 6.972100071
298200 16.05940429 85.1 1 16.05940429
298246 -0.8 1 7.288495293
298248 1.4 1 7.36408875

Total number of rows: 32996

Table truncated, full table size 1038 Kbytes.




Supplementary file Size Download File type/resource
GSM179998.txt.gz 250.4 Kb (ftp)(http) TXT

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