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Sample GSM18 Query DataSets for GSM18
Status Public on Jan 24, 2001
Title NHGRI_MCF-10A
Sample type RNA
 
Channel 1
Source name epithelium, breast
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name NHGRI_Melanoma_Ref
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description See http://www.nhgri.nih.gov/DIR/Microarray/Nature_paper.pdf
and http://www.nhgri.nih.gov/DIR/Microarray/Melanoma_Supplement/index.html
 
Submission date Jan 08, 2001
Last update date May 27, 2005
Contact name Michael Bittner
E-mail(s) mbittner@nhgri.nih.gov
Phone 301-496-7980
Fax 301-402-3241
URL http://www.nhgri.nih.gov/Intramural_research/People/bittnerm.html
Organization name NHGRI, NIH
Department Cancer Genetics Branch
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL7
Series (1)
GSE1 NHGRI_Melanoma_class

Data table header descriptions
ID_REF
CH1_TARGET_TOP Sample 1 (Red Channel) target location in image - top
CH1_TARGET_LT Sample 1 (Red Channel) target location in image - left
CH1_TARGET_BOT Sample 1 (Red Channel) target location in image - bottom
CH1_TARGET_RT Sample 1 (Red Channel) target location in image - right
CH1_RAW Sample 1 (Red Channel) Total Intensity
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_AREA Sample 1 (Red Channel) Area
CH1_BKD_MEAN Sample 1 (Red Channel) Mean Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_TARGET_TOP Sample 2 (Green Channel) target location in image - top
CH2_TARGET_LT Sample 2 Green Channel) target location in image - left
CH2_TARGET_BOT Sample 2 Green Channel) target location in image - bottom
CH2_TARGET_RT Sample 2 Green Channel) target location in image - right
CH2_RAW Sample 2 Green Channel) Total Intensity
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_AREA Sample 2 Green Channel) Area
CH2_BKD_MEAN Sample 2 Green Channel) Mean Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
UNION_AREA Union Area
RATIO Raw Ratio
VALUE log ratio of PRE_VALUE
CONF_LEVEL Confidence Level - fixed at 99%
CONF_LOW Confidence Interval - Lower Bound - Raw Ratio
CONF_UP Confidence Interval - Upper Bound - Raw Ratio
NORM_FACTOR M-value
CV Coefficient of variance
PRE_VALUE Calibrated Ratio

Data table
ID_REF CH1_TARGET_TOP CH1_TARGET_LT CH1_TARGET_BOT CH1_TARGET_RT CH1_RAW CH1_MEAN CH1_SD CH1_AREA CH1_BKD_MEAN CH1_BKD_SD CH2_TARGET_TOP CH2_TARGET_LT CH2_TARGET_BOT CH2_TARGET_RT CH2_RAW CH1_MEAN CH2_SD CH2_AREA CH2_BKD_MEAN CH2_BKD_SD UNION_AREA RATIO VALUE CONF_LEVEL CONF_LOW CONF_UP NORM_FACTOR CV PRE_VALUE
1 87 151 105 169 5553615 44281.9 21197.7 123 1615.8 224.8 87 151 105 169 5744409 45016.6 17897.2 129 2457.8 343.4 129 0.984 0.1476763 99.000 0.286 1.714 0.700 0.213 1.405
2 703 159 721 177 264774 5082.9 4314.5 33 1706.2 187.6 703 159 721 177 206548 3201.4 1595.6 43 2094.7 304.3 47 1.588 0.3554523 99.000 0.286 1.714 0.700 0.213 2.267
3 123 151 141 169 130529 2640.9 1429.5 35 1569.7 184.8 123 151 141 169 206183 3808.2 1590.5 37 2842.9 394.4 39 0.693 -0.0043653 99.000 0.286 1.714 0.700 0.213 0.990
4 739 159 757 177 242044 2431.1 1229.2 64 1671.3 168.0 739 159 757 177 425651 5158.1 2760.1 60 2056.4 271.9 67 0.471 -0.1719853 99.000 0.286 1.714 0.700 0.213 0.673
5 160 151 178 169 529747 4768.6 2749.1 85 1463.7 141.5 160 151 178 169 860956 8038.8 4123.4 91 2090.0 396.5 93 0.593 -0.0721173 99.000 0.286 1.714 0.700 0.213 0.847
6 775 159 793 177 3117463 33629.9 19452.1 93 1795.8 190.7 775 159 793 177 3708560 39934.8 19161.2 96 2207.9 315.0 96 0.842 0.0802663 99.000 0.286 1.714 0.700 0.213 1.203
7 196 151 214 169 767900 6606.8 2805.4 98 1392.1 185.6 196 151 214 169 1295660 11638.3 4707.5 104 1858.1 293.3 104 0.568 -0.0909793 99.000 0.286 1.714 0.700 0.213 0.811
8 812 159 830 177 1727721 19254.7 17497.2 75 1815.0 202.9 812 159 830 177 2644184 30003.7 21324.6 90 2242.5 311.7 90 0.642 -0.0376313 99.000 0.286 1.714 0.700 0.213 0.917
9 233 150 251 168 818433 8111.5 5004.2 93 1405.1 159.5 233 150 251 168 618675 5332.1 3485.2 79 1861.8 283.4 94 1.521 0.3370603 99.000 0.286 1.714 0.700 0.213 2.173
10 848 159 866 177 232555 1789.1 936.4 71 1734.4 160.9 848 159 866 177 290008 2256.7 1299.0 52 2137.4 290.2 74 0.793 0.0538463 99.000 0.286 1.714 0.700 0.213 1.132
11 269 150 287 168 1327044 11525.1 6281.2 104 1485.2 175.4 269 150 287 168 1898572 16538.3 8286.0 110 2075.1 324.9 110 0.697 -0.0021773 99.000 0.286 1.714 0.700 0.213 0.995
12 884 159 902 177 31482 2690.0 993.6 14 1807.4 174.6 884 159 902 177 43501 3982.2 1974.4 14 2232.3 329.6 15 0.676 -0.0154733 99.000 0.286 1.714 0.700 0.213 0.965
13 92 771 110 789 692202 6145.2 2350.0 97 1218.6 155.0 92 771 110 789 633668 5086.3 1803.5 101 1654.8 271.1 102 1.208 0.2367893 99.000 0.286 1.714 0.700 0.213 1.725
14 693 767 711 785 2707109 29142.9 12333.0 96 1619.7 298.7 693 767 711 785 1531250 15607.2 5987.6 88 1793.4 459.7 96 1.867 0.4260233 99.000 0.286 1.714 0.700 0.213 2.667
15 128 771 146 789 793472 6123.4 2853.7 98 1292.2 173.1 128 771 146 789 2496965 21527.0 7901.8 115 1809.2 290.7 115 0.284 -0.3914743 99.000 0.286 1.714 0.700 0.213 0.406
16 729 767 747 785 822744 9268.1 3507.3 80 1701.9 179.8 729 767 747 785 582573 5721.6 2007.6 79 2046.1 247.7 83 1.620 0.3641763 99.000 0.286 1.714 0.700 0.213 2.313
17 165 771 183 789 661462 5863.5 2794.4 97 1326.3 179.8 165 771 183 789 801596 6896.3 3014.9 98 1816.7 311.7 100 0.850 0.0842193 99.000 0.286 1.714 0.700 0.213 1.214
18 766 767 784 785 335051 3168.6 1372.2 74 1687.2 152.3 766 767 784 785 671853 7582.0 2799.7 77 2155.0 272.9 77 0.418 -0.2240263 99.000 0.286 1.714 0.700 0.213 0.597
19 201 771 219 789 499709 3765.0 1991.0 88 1440.3 208.9 201 771 219 789 1053641 9084.5 3759.6 102 1890.9 304.4 104 0.414 -0.2276783 99.000 0.286 1.714 0.700 0.213 0.592
20 802 767 820 785 699047 7311.0 3107.2 82 1767.5 188.8 802 767 820 785 897058 9429.3 3613.7 80 2220.8 319.1 85 0.775 0.0441483 99.000 0.286 1.714 0.700 0.213 1.107

Total number of rows: 8192

Table truncated, full table size 1342 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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