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Sample GSM1801 Query DataSets for GSM1801
Status Public on Jun 27, 2002
Title E6:_U937_phoP _3h
Sample type RNA
 
Channel 1
Source name U937/AGS ref, 2uL, 1st strand label
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name E6:_U937_phoP _3h, 1st strand label
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Pathogen
Subcategory: Salmonella
E5:_U937_ phoP _3h
Scanning Software: GenePix
Software version: Pro
Lot batch = shai072
 
Submission date Jun 18, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL183
Series (1)
GSE503 Macrophages infected with Salmonella

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log10 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 837 821 7806 10759 9573 1239 1186 1192 9620 10812 .96 0 .301 1.217 100 100 .815 .811 1.226 1.232 1.188 268 52 46 54 65 73 .301
2 814 799 9191 11422 10267 1237 1155 1161 10318 11478 .97 0 .167 1.131 100 100 .895 .891 1.117 1.123 1.079 274 52 46 54 80 88 .167
3 1048 1004 4709 4133 2933 1241 1200 1206 2947 4153 .92 0 -.676 .618 98 94 1.606 1.598 .623 .626 .609 274 52 46 54 96 104 -.676
4 1063 1031 1139 1899 592 1344 1307 1313 595 1908 .5 0 -.937 .576 94 53 1.924 1.915 .52 .522 .497 280 52 46 54 111 119 -.937
5 951 928 1821 3209 1902 1384 1307 1313 1911 3225 .82 0 .07 1.066 100 87 .957 .953 1.044 1.05 .967 212 32 47 54 125 132 .07
6 883 863 9640 11151 9927 1282 1224 1230 9976 11206 .97 0 .049 .999 100 98 .971 .966 1.03 1.035 1.02 285 52 46 54 141 149 .049
7 843 816 2772 3386 2144 1281 1242 1248 2155 3403 .81 0 -.364 .782 100 92 1.293 1.287 .773 .777 .728 267 52 46 54 155 163 -.364
8 829 820 1264 2298 1024 1282 1274 1280 1029 2309 .73 0 -.297 .818 98 82 1.234 1.228 .81 .814 .787 264 52 47 55 170 178 -.297
9 846 831 39046 21727 20494 1273 1233 1239 20595 21834 .97 0 -.923 .517 100 100 1.905 1.896 .525 .527 .514 284 52 47 55 185 193 -.923
10 858 829 958 1544 395 1219 1149 1155 397 1552 .5 0 -1.271 .555 96 50 2.425 2.413 .412 .414 .402 230 32 47 54 200 207 -1.271
11 877 804 1253 59309 58092 1334 1217 1223 58378 59601 .92 0 5.542 50.092 76 100 .022 .021 46.362 46.591 38.931 318 52 47 55 216 224 5.542
12 876 841 24136 4450 3125 1391 1325 1332 3140 4472 .93 0 -2.942 .123 100 94 7.724 7.686 .129 .13 .129 285 52 47 55 232 240 -2.942
13 910 814 5320 4633 3326 1370 1307 1313 3342 4656 .9 0 -.671 .618 100 96 1.6 1.592 .625 .628 .574 264 52 47 55 247 255 -.671
14 1161 848 29582 18567 17280 1335 1287 1293 17365 18659 .98 0 -.769 .593 100 100 1.712 1.704 .584 .587 .576 285 52 47 55 261 269 -.769
15 1605 1383 2029 2276 961 1375 1315 1321 966 2287 .67 -100 .478 75 81 2.111 2.101 .474 .476 .272 170 32 48 54 277 283 -1.071
16 1611 1824 3946 33837 32537 1344 1300 1306 32697 34004 .92 0 3.051 8.172 98 100 .121 .121 8.246 8.286 7.023 312 52 47 55 292 300 3.051
17 653 604 28007 27132 25872 1329 1260 1266 26000 27266 .98 0 -.107 .913 100 100 1.083 1.077 .924 .928 .912 226 32 47 54 308 315 -.107
18 795 600 1386 18534 17269 1472 1265 1271 17354 18625 .41 0 3.646 13.273 9 100 .08 .08 12.46 12.521 1.531 216 32 47 54 322 329 3.646
19 646 557 15813 15885 14705 1223 1180 1186 14778 15963 .98 0 -.098 .927 100 100 1.075 1.07 .93 .935 .914 308 52 47 55 337 345 -.098
20 717 613 4603 5929 4792 1169 1137 1143 4816 5958 .95 0 .065 1.081 100 100 .961 .956 1.041 1.046 1.076 212 32 47 54 352 359 .065

Total number of rows: 24192

Table truncated, full table size 3085 Kbytes.




Supplementary data files not provided
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