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Sample GSM1803 Query DataSets for GSM1803
Status Public on Jun 27, 2002
Title E6:_U937_phoP_4h
Sample type RNA
 
Channel 1
Source name U937/AGS ref, 2uL, 1st strand label
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name E6:_U937_phoP-4h, 1st strand label
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Pathogen
Subcategory: Salmonella
E6:_U937_phoP_4h
Scanning Software: GenePix
Software version: Pro
Lot batch = shad034
 
Submission date Jun 18, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL177
Series (1)
GSE503 Macrophages infected with Salmonella

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log10 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 82 81 1582 1280 1087 197 193 225 1270 1495 .98 0 -.317 .687 100 100 1.455 1.246 .687 .803 .692 508 80 39 50 57 68 -.317
2 82 82 969 808 615 196 193 225 718 944 .93 0 -.432 .622 100 98 1.576 1.349 .635 .741 .642 229 52 40 48 74 82 -.432
3 83 82 447 314 125 191 189 221 146 367 .77 0 -1.614 .31 100 92 3.576 3.061 .28 .327 .264 383 80 41 51 88 98 -1.614
4 84 82 129 245 56 191 189 221 65 286 .3 0 -.98 .458 100 56 2.304 1.972 .434 .507 .28 411 80 39 50 102 113 -.98
5 84 83 171 310 124 190 186 217 145 362 .7 0 -.239 .633 100 90 1.379 1.18 .725 .847 .636 304 52 40 49 118 127 -.239
6 92 86 1406 1026 834 199 192 224 974 1199 .97 0 -.529 .593 100 100 1.686 1.443 .593 .693 .59 419 80 40 50 134 144 -.529
7 85 85 354 327 134 198 193 225 157 382 .78 0 -1.177 .361 98 76 2.642 2.261 .379 .442 .375 286 52 42 50 150 158 -1.177
8 85 84 131 302 112 196 190 222 131 353 .64 0 -.002 .844 100 81 1.17 1.001 .855 .999 .703 153 32 44 50 167 173 -.002
9 86 86 9974 4573 4375 199 198 231 5111 5342 .99 0 -.965 .429 100 100 2.28 1.952 .439 .512 .437 260 52 41 49 178 186 -.965
10 86 83 179 248 51 200 197 230 60 290 .47 0 -1.587 .285 100 46 3.51 3.004 .285 .333 .293 170 32 43 49 194 200 -1.587
11 86 83 207 21892 21698 199 194 227 25348 25574 .96 0 6.936 87.614 100 100 .01 .008 104.821 122.452 97.185 357 52 40 49 208 217 6.936
12 88 85 3980 497 301 222 196 229 352 581 .29 0 -3.501 .08 100 42 13.223 11.319 .076 .088 .066 310 52 41 50 224 233 -3.501
13 95 86 1328 639 444 201 195 228 519 746 .95 0 -1.356 .329 100 98 2.991 2.56 .334 .391 .337 356 80 41 51 238 248 -1.356
14 89 87 5440 3478 3279 202 199 232 3831 4063 .98 0 -.506 .598 100 100 1.659 1.42 .603 .704 .592 388 80 41 51 253 263 -.506
15 91 88 546 357 151 212 206 241 176 417 .78 0 -1.63 .298 100 76 3.616 3.095 .277 .323 .273 278 52 42 51 268 277 -1.63
16 91 89 759 10191 9987 208 204 238 11667 11905 .98 0 3.942 13.057 100 100 .076 .065 13.158 15.371 12.8 365 80 41 51 283 293 3.942
17 87 84 4212 4339 4135 237 204 238 4831 5069 .99 0 .198 .983 100 100 1.019 .872 .982 1.147 .967 393 80 40 51 297 308 .198
18 174 82 159 1430 1240 313 190 222 1449 1671 .91 0 3.188 8.343 0 28 .128 .11 7.799 9.11 6.537 362 80 39 49 313 323 3.188
19 364 94 3015 1893 1697 425 196 229 1982 2211 .98 0 -.605 .56 93 21 1.777 1.521 .563 .658 .562 211 32 42 49 328 335 -.605
20 142 109 741 748 529 257 219 256 618 874 .93 0 -.262 .714 100 100 1.401 1.199 .714 .834 .664 80 12 41 46 343 348 -.262

Total number of rows: 24192

Table truncated, full table size 2872 Kbytes.




Supplementary data files not provided
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