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Sample GSM180670 Query DataSets for GSM180670
Status Public on Apr 25, 2007
Title SAGE_lymphocytes_normal_children
Sample type SAGE
Anchor NlaIII
Tag Count 40395
Tag Length 10
 
Source name Lymphocytes from normal children (pooled samples)
Organism Homo sapiens
Characteristics Lymphocytes from normal children 1-4 years old
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from lymphocytes with TRIzol Reagent (Invitrogen), according to the manufacturer’s instructions
 
Description Lymphocytes were prepared from peripheral blood using Ficoll density centrifugation. Equal quantities of RNA were pooled and used to construct the SAGE library.
 
Submission date Apr 05, 2007
Last update date Nov 19, 2008
Contact name CĂ©sar Adolfo Sommer
URL http://www.ufscar.br/~dge/lbm.html
Organization name Universidade Federal de Sao Carlos
Department Genetics and Evolution
Lab LBM
Street address Rodovia Washington Luis (SP-310), km 235
City Sao Carlos
State/province Sao Paulo
ZIP/Postal code 13565-905
Country Brazil
 
Platform ID GPL4
Series (1)
GSE7464 Identification of dysregulated genes in lymphocytes from children with Down syndrome

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
GTTGTGGTTA 629 15571.23
AAAACATTCT 513 12699.59
ATAATTCTTT 464 11486.57
TACCTGCAGA 439 10867.68
CTAAGACTTC 333 8243.59
TAGGTTGTCT 318 7872.26
GCATAATAGG 312 7723.73
TAATAAAGGT 284 7030.57
CTGGGTTAAT 269 6659.24
GAGGGAGTTT 223 5520.49
ACACAGCAAG 216 5347.20
GTTCACATTA 209 5173.91
CACAAACGGT 203 5025.37
GAAAAATGGT 203 5025.37
GCAAGAAAGT 174 4307.46
TTGGTGAAGG 165 4084.66
CAAGCATCCC 165 4084.66
TTGGTCCTCT 162 4010.40
TCAGATCTTT 162 4010.40
TTCAATAAAA 161 3985.64

Total number of rows: 14397

Table truncated, full table size 268 Kbytes.




Supplementary data files not provided

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