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Sample GSM1812 Query DataSets for GSM1812
Status Public on Jun 27, 2002
Title E2:_U937_mock_1h
Sample type RNA
 
Channel 1
Source name U937/AGS ref, 2uL
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name E2:_U937_mock_1h
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Pathogen
Subcategory: Salmonella
E2:_U937_mock_1h
Scanning Software: GenePix
Software version: 2.1.0.35
Lot batch = shs053
 
Submission date Jun 18, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL181
Series (1)
GSE503 Macrophages infected with Salmonella

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log10 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 15 14 434 110 103 8 7 21 305 325 .915 0 -.51 .228 98 10 4.214 1.424 .237 .702 .204 336 52 106 115 68 77 -.51
2 15 13 496 131 125 7 6 18 370 388 .868 0 -.424 .257 10 10 3.968 1.341 .252 .746 .215 266 52 106 114 84 92 -.424
3 15 13 175 76 70 6 6 18 207 225 .857 0 .243 .404 94 10 2.5 .845 .4 1.183 .323 324 52 105 114 98 107 .243
4 15 13 93 57 49 8 8 24 145 169 .822 0 .64 .521 96 92 1.898 .642 .527 1.559 .448 324 52 104 113 113 122 .64
5 17 14 162 75 65 10 10 30 192 222 .923 0 .247 .411 73 91 2.492 .842 .401 1.187 .357 384 80 104 114 129 139 .247
6 15 13 306 106 97 10 9 27 287 314 .838 0 -.093 .329 94 90 3.155 1.066 .317 .938 .285 258 52 104 112 144 152 -.093
7 90 14 107 47 38 22 9 27 112 139 .729 0 .071 .375 0 0 2.816 .952 .355 1.051 .297 219 32 103 110 160 167 .071
8 427 15 30 22 13 252 9 27 38 65 .701 0 .358 .47 0 0 2.308 .78 .433 1.282 .492 258 52 105 113 174 182 .358
9 16 13 906 198 190 9 8 24 562 586 .871 0 -.689 .219 96 86 4.768 1.612 .21 .62 .188 272 52 103 111 189 197 -.689
10 15 13 86 45 37 9 8 24 109 133 .771 0 .348 .444 10 86 2.324 .786 .43 1.273 .367 337 52 101 110 204 213 .348
11 14 13 67 416 407 10 9 27 1204 1231 .824 0 4.168 5.689 80 90 .165 .056 6.075 17.972 4.634 253 52 104 112 220 228 4.168
12 39 14 1036 92 83 21 9 27 246 272 .851 0 -2.077 .09 84 26 12.482 4.219 .08 .237 .066 264 52 103 111 235 243 -2.077
13 16 12 290 159 151 9 8 24 447 470 .868 0 .623 .492 96 10 1.921 .649 .521 1.541 .438 313 52 101 110 249 258 .623
14 15 12 1589 419 411 10 8 24 1216 1240 .876 0 -.386 .25 10 94 3.866 1.307 .259 .765 .23 253 52 101 109 264 272 -.386
15 23 12 232 78 70 18 8 24 207 231 .374 0 -.164 .319 90 70 3.314 1.12 .302 .893 .284 264 52 101 109 280 288 -.164
16 13 12 180 258 250 8 8 24 740 763 .869 0 2.039 1.337 83 91 .72 .243 1.389 4.109 1.079 358 80 101 111 294 304 2.039
17 22 11 1351 866 858 13 8 24 2538 2562 .864 0 .91 .637 90 98 1.575 .532 .635 1.879 .52 300 52 100 109 308 317 .91
18 20 11 112 249 240 13 9 27 710 737 .885 0 2.664 2.181 63 97 .467 .158 2.143 6.34 1.822 393 80 98 108 325 335 2.664
19 12 12 498 194 186 8 8 24 550 574 .869 0 .144 .378 10 10 2.677 .905 .373 1.105 .309 293 52 99 108 339 348 .144
20 13 11 204 124 117 8 7 21 346 367 .861 0 .763 .621 90 92 1.744 .589 .574 1.697 .508 245 52 99 107 354 362 .763

Total number of rows: 24192

Table truncated, full table size 2663 Kbytes.




Supplementary data files not provided
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