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Sample GSM1813 Query DataSets for GSM1813
Status Public on Jun 27, 2002
Title E2:_U937_wild-type_1ha
Sample type RNA
 
Channel 1
Source name U937/AGS ref, 2uL
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name E2:_U937_salm_1ha
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Pathogen
Subcategory: Salmonella
E2:_U937_salm_1ha
Scanning Software: GenePix
Software version: 2.1.0.35
Lot batch = shs054
 
Submission date Jun 18, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL181
Series (1)
GSE503 Macrophages infected with Salmonella

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log10 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 2 2 38 9 9 1 0 0 22 22 .712 0 -.788 .239 98 88 4.222 1.727 .237 .579 .182 346 52 53 62 67 76 -.788
2 2 2 42 11 11 1 0 0 27 27 .781 0 -.643 .235 10 92 3.818 1.562 .262 .64 .213 274 52 55 63 83 91 -.643
3 2 2 13 5 5 1 0 0 12 12 .5 0 -.089 .455 96 88 2.6 1.063 .385 .94 .212 326 52 54 63 98 107 -.089
4 2 2 8 3 3 1 0 0 7 7 .376 0 -.125 .444 98 63 2.667 1.091 .375 .917 .183 274 52 55 63 114 122 -.125
5 3 3 23 11 11 1 0 0 27 27 .822 0 .226 .464 10 90 2.091 .855 .478 1.169 .357 285 52 56 64 129 137 .226
6 3 3 43 18 18 1 0 0 44 44 .809 0 .033 .396 98 10 2.389 .977 .419 1.023 .316 350 52 55 64 143 152 .033
7 3 2 12 5 5 1 0 0 12 12 .549 0 .027 .417 96 87 2.4 .982 .417 1.019 .27 225 32 55 62 159 166 .027
8 3 3 6 4 3 1 1 2 7 10 .332 0 .29 1 71 53 2 .818 .5 1.222 .256 155 32 56 62 175 181 .29
9 3 2 151 39 39 1 0 0 95 95 .844 0 -.663 .277 97 91 3.872 1.584 .258 .631 .212 402 80 55 65 188 198 -.663
10 2 2 10 4 4 1 0 0 10 10 .439 0 -.032 .4 94 86 2.5 1.023 .4 .978 .222 273 52 56 64 204 212 -.032
11 2 2 9 83 83 1 0 0 203 203 .799 0 4.495 8.5 80 10 .108 .044 9.222 22.548 5.932 312 52 56 65 219 228 4.495
12 2 2 130 11 10 1 1 2 24 27 .721 0 -2.411 .077 98 90 13 5.317 .077 .188 .066 336 52 55 64 233 242 -2.411
13 2 2 31 17 16 1 1 2 39 42 .809 0 .336 .533 96 98 1.938 .792 .516 1.262 .427 323 52 56 65 249 258 .336
14 2 2 198 54 53 1 1 2 130 132 .82 0 -.612 .289 10 96 3.736 1.528 .268 .654 .245 319 52 55 64 263 272 -.612
15 2 2 21 6 5 1 1 2 12 15 .683 0 -.781 .238 94 84 4.2 1.718 .238 .582 .219 313 52 56 65 278 287 -.781
16 2 2 20 27 26 1 1 2 64 66 .828 0 1.668 1.226 88 96 .769 .315 1.3 3.178 1.037 394 80 57 67 293 303 1.668
17 3 2 178 118 117 1 1 2 286 289 .828 0 .684 .733 96 10 1.521 .622 .657 1.607 .586 313 52 56 65 308 317 .684
18 2 2 11 34 33 1 1 2 81 83 .831 0 2.875 2.833 85 10 .333 .136 3 7.335 2.135 377 80 57 67 324 334 2.875
19 2 2 59 25 24 1 1 2 59 61 .763 0 -.008 .417 96 98 2.458 1.005 .407 .995 .333 313 52 56 65 339 348 -.008
20 2 2 18 16 15 1 1 2 37 39 .742 0 1.027 .786 94 96 1.2 .491 .833 2.037 .584 302 52 57 66 353 362 1.027

Total number of rows: 24192

Table truncated, full table size 2404 Kbytes.




Supplementary data files not provided

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