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Sample GSM1814 Query DataSets for GSM1814
Status Public on Jun 27, 2002
Title E3:_U937_mock_0.5h
Sample type RNA
 
Channel 1
Source name mock 0.5h
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name U937/AGS ref, 2uL
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Pathogen
Subcategory: Salmonella
E3: U937 mock 0.5h
Scanning Software: GenePix
Software version: 2.1.0.35
Lot batch = shs072
 
Submission date Jun 18, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL181
Series (1)
GSE503 Macrophages infected with Salmonella

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log10 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 162 154 5423 5008 4929 81 79 30 1860 1890 .923 0 -1.544 .891 10 10 1.1 2.916 .909 .343 .853 304 52 95 104 38 47 -1.544
2 194 170 3210 4922 4836 104 86 32 1825 1857 .945 0 -.815 1.509 10 10 .664 1.759 1.507 .569 1.509 335 52 94 103 54 63 -.815
3 196 165 2007 6139 6049 118 90 34 2283 2317 .882 0 .186 2.619 10 10 .332 .879 3.014 1.137 3.127 327 52 94 103 69 78 .186
4 179 166 878 8326 8222 146 104 39 3103 3142 .897 0 1.821 8.832 10 10 .107 .283 9.364 3.534 8.123 347 52 94 103 84 93 1.821
5 177 166 1451 8677 8576 145 101 38 3236 3274 .915 0 1.157 6.062 10 10 .169 .448 5.91 2.23 5.583 226 32 95 102 101 108 1.157
6 195 165 4005 6847 6759 125 88 33 2551 2584 .913 0 -.651 1.703 10 10 .593 1.57 1.688 .637 1.657 350 52 93 102 115 124 -.651
7 283 160 1187 2214 2128 225 86 32 803 835 .904 0 -.564 1.657 59 92 .558 1.478 1.793 .677 1.551 273 52 94 102 132 140 -.564
8 166 160 824 1886 1789 99 97 37 675 712 .884 0 -.288 2.455 10 10 .461 1.221 2.171 .819 1.708 255 52 94 102 146 154 -.288
9 178 164 14280 4762 4667 107 95 36 1761 1797 .922 0 -3.019 .313 10 10 3.06 8.108 .327 .123 .304 273 52 94 102 160 168 -3.019
10 182 167 1276 7426 7334 108 92 35 2768 2802 .941 0 1.117 5.58 10 10 .174 .461 5.748 2.169 5.189 282 52 94 102 176 184 1.117
11 167 157 679 3094 3000 100 94 35 1132 1168 .904 0 .737 4.422 98 10 .226 .6 4.418 1.667 3.616 274 52 94 102 191 199 .737
12 165 162 5992 4679 4589 95 90 34 1732 1766 .892 0 -1.791 .732 10 10 1.306 3.46 .766 .289 .713 327 52 92 101 205 214 -1.791
13 164 157 1594 4197 4110 91 87 33 1551 1584 .924 0 -.04 2.401 10 10 .388 1.028 2.578 .973 2.394 314 52 92 101 220 229 -.04
14 180 168 16661 10925 10839 105 86 32 4090 4123 .935 0 -2.026 .704 10 10 1.537 4.073 .651 .245 .642 327 52 92 101 234 243 -2.026
15 182 175 2438 14236 14143 116 93 35 5337 5372 .935 0 1.13 6.005 10 10 .172 .457 5.801 2.189 5.524 322 52 92 101 250 259 1.13
16 169 163 2065 6979 6899 82 80 30 2603 2634 .932 0 .334 3.503 10 10 .299 .793 3.341 1.261 3.231 289 52 92 101 264 273 .334
17 173 166 19454 11375 11299 78 76 29 4264 4292 .957 0 -2.19 .553 10 10 1.722 4.563 .581 .219 .593 444 80 90 101 277 288 -2.19
18 235 179 1897 15225 15124 311 101 38 5707 5745 .949 0 1.589 7.794 10 10 .125 .332 7.973 3.009 7.65 335 52 92 101 294 303 1.589
19 215 175 4742 3959 3850 266 109 41 1453 1494 .922 0 -1.707 .828 10 98 1.232 3.264 .812 .306 .739 324 52 91 100 310 319 -1.707
20 158 152 1535 4892 4798 96 94 35 1811 1846 .923 0 .238 3.375 10 10 .32 .848 3.126 1.18 2.871 304 52 91 100 324 333 .238

Total number of rows: 24192

Table truncated, full table size 3002 Kbytes.




Supplementary data files not provided
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