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Sample GSM1816 Query DataSets for GSM1816
Status Public on Jun 27, 2002
Title E3:_U937_wild-type_0.5h
Sample type RNA
 
Channel 1
Source name wild-type 0.5h
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name U937/AGS ref, 2uL
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Pathogen
Subcategory: Salmonella
E3: U937 salm 0.5h
Scanning Software: GenePix
Software version: 2.1.0.35
Lot batch = shs073
 
Submission date Jun 18, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL181
Series (1)
GSE503 Macrophages infected with Salmonella

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log10 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 22 21 482 215 201 15 14 10 147 157 .851 0 -1.716 .364 10 10 2.398 3.285 .417 .304 .339 333 52 97 106 38 47 -1.716
2 24 22 205 204 188 19 16 12 137 149 .862 0 -.579 1 10 96 1.09 1.494 .917 .669 .831 335 52 96 105 54 63 -.579
3 24 22 122 149 132 21 17 12 96 109 .815 0 -.341 1.095 96 10 .924 1.266 1.082 .79 .889 277 52 97 105 70 78 -.341
4 24 23 55 114 97 18 17 12 71 83 .819 0 .364 1.825 88 10 .567 .777 1.764 1.287 1.285 265 52 97 105 85 93 .364
5 22 21 132 223 208 16 15 11 152 163 .817 0 .202 1.358 94 96 .635 .869 1.576 1.15 1.346 275 52 96 104 100 108 .202
6 22 20 377 457 443 15 14 10 323 334 .904 0 -.221 1.112 92 10 .851 1.166 1.175 .858 .971 314 52 95 104 114 123 -.221
7 21 20 71 81 66 16 15 11 48 59 .725 0 -.56 .92 98 10 1.076 1.474 .93 .679 .638 278 52 95 103 130 138 -.56
8 22 21 52 89 72 19 17 12 53 65 .746 0 .015 1.279 10 10 .722 .989 1.385 1.011 1.06 214 32 94 101 144 151 .015
9 23 22 1750 569 552 18 17 12 403 415 .854 0 -2.119 .299 10 10 3.17 4.343 .315 .23 .287 279 52 94 102 160 168 -2.119
10 22 21 108 121 104 17 17 12 76 88 .84 0 -.509 .944 10 98 1.038 1.423 .963 .703 .856 273 52 94 102 174 182 -.509
11 21 20 79 440 425 16 15 11 310 321 .833 0 1.973 5.239 94 10 .186 .255 5.38 3.927 4.027 282 52 94 102 190 198 1.973
12 21 20 785 269 253 17 16 12 185 196 .862 0 -2.088 .307 10 10 3.103 4.251 .322 .235 .302 273 52 93 101 205 213 -2.088
13 23 20 178 233 216 19 17 12 158 170 .858 0 -.175 1.223 98 10 .824 1.129 1.213 .886 1.017 324 52 92 101 219 228 -.175
14 22 21 1664 568 551 18 17 12 402 415 .904 0 -2.049 .337 10 10 3.02 4.137 .331 .242 .319 345 52 91 100 234 243 -2.049
15 21 20 188 165 150 16 15 11 109 120 .86 0 -.78 .738 98 10 1.253 1.717 .798 .582 .627 314 52 92 101 249 258 -.78
16 22 22 146 400 384 17 16 12 280 292 .855 0 .941 2.554 10 10 .38 .521 2.63 1.92 2.19 313 52 91 100 264 273 .941
17 23 21 1478 1254 1237 19 17 12 903 915 .905 0 -.711 .786 10 10 1.195 1.637 .837 .611 .738 383 80 90 100 279 289 -.711
18 22 21 67 193 177 18 16 12 129 141 .85 0 .947 2.745 92 10 .379 .519 2.642 1.928 2.17 387 80 90 100 295 305 .947
19 22 21 318 243 226 18 17 12 165 177 .887 0 -.947 .723 10 10 1.407 1.928 .711 .519 .677 313 52 89 98 310 319 -.947
20 23 22 99 136 120 17 16 12 88 99 .827 0 -.177 1.203 96 10 .825 1.13 1.212 .885 .989 266 52 90 98 326 334 -.177

Total number of rows: 24192

Table truncated, full table size 2750 Kbytes.




Supplementary data files not provided
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