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Sample GSM1817 Query DataSets for GSM1817
Status Public on Jun 27, 2002
Title E3:_U937_wild-type_4h
Sample type RNA
 
Channel 1
Source name salm 4h
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name U937/AGS ref, 2uL
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Pathogen
Subcategory: Salmonella
E3: U937 salm 4h
Scanning Software: GenePix
Software version: 2.1.0.35
Lot batch = shs075
 
Submission date Jun 18, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL181
Series (1)
GSE503 Macrophages infected with Salmonella

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log10 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 12 12 355 249 244 5 5 3 151 154 .921 0 -1.237 .675 10 10 1.455 2.357 .687 .424 .637 333 52 48 57 30 39 -1.237
2 13 12 158 290 284 6 6 4 175 179 .922 0 .15 1.854 98 10 .556 .901 1.797 1.11 1.629 394 80 48 58 46 56 .15
3 14 13 123 153 148 6 5 3 91 94 .916 0 -.429 1.167 98 10 .831 1.346 1.203 .743 1.08 327 52 47 56 61 70 -.429
4 14 13 39 127 122 7 5 3 75 78 .856 0 .949 3.289 94 10 .32 .518 3.128 1.931 2.376 336 52 48 57 76 85 .949
5 16 13 64 197 191 13 6 4 118 122 .896 0 .881 3.236 91 91 .335 .543 2.984 1.842 3.231 98 12 49 54 93 98 .881
6 13 12 319 385 380 7 5 3 235 238 .915 0 -.444 1.207 10 10 .839 1.36 1.191 .735 1.096 359 52 46 55 106 115 -.444
7 12 12 72 92 87 5 5 3 54 57 .911 0 -.423 1.269 98 10 .828 1.341 1.208 .746 1.086 348 52 46 55 122 131 -.423
8 12 12 47 100 95 5 5 3 59 62 .9 0 .319 1.922 94 10 .495 .801 2.021 1.248 1.686 304 52 46 55 137 146 .319
9 13 12 1399 571 566 5 5 3 349 352 .917 0 -2.002 .405 10 10 2.472 4.004 .405 .25 .36 304 52 46 55 151 160 -2.002
10 13 12 68 122 117 5 5 3 72 75 .87 0 .087 1.528 10 10 .581 .942 1.721 1.062 1.622 343 52 45 54 166 175 .087
11 13 12 73 1707 1701 6 6 4 1050 1054 .903 0 3.846 22.068 96 10 .043 .07 23.301 14.384 20.169 332 52 45 54 182 191 3.846
12 12 12 407 196 191 5 5 3 118 121 .926 0 -1.787 .449 10 10 2.131 3.452 .469 .29 .413 315 52 45 54 196 205 -1.787
13 12 12 110 151 146 5 5 3 90 93 .89 0 -.288 1.25 98 10 .753 1.221 1.327 .819 1.122 326 52 45 54 211 220 -.288
14 12 12 1128 356 351 5 5 3 217 220 .923 0 -2.38 .316 10 10 3.214 5.206 .311 .192 .296 322 52 44 53 226 235 -2.38
15 12 11 140 153 148 5 5 3 91 94 .895 0 -.616 1.017 10 10 .946 1.532 1.057 .653 .927 306 52 46 55 240 249 -.616
16 12 11 97 515 510 6 5 3 315 318 .913 0 1.698 5.138 98 10 .19 .308 5.258 3.246 4.7 313 52 45 54 255 264 1.698
17 12 11 1034 1382 1377 6 5 3 850 853 .943 0 -.283 1.329 10 10 .751 1.216 1.332 .822 1.222 385 80 45 55 270 280 -.283
18 12 11 44 225 219 8 6 4 135 139 .917 0 1.619 5.245 92 10 .201 .325 4.977 3.072 4.489 440 80 43 54 285 296 1.619
19 11 11 217 143 137 7 6 4 85 88 .913 0 -1.36 .671 96 97 1.584 2.566 .631 .39 .573 363 80 44 54 301 311 -1.36
20 11 10 71 104 99 5 5 3 61 64 .894 0 -.216 1.484 91 98 .717 1.162 1.394 .861 1.227 353 80 44 54 316 326 -.216

Total number of rows: 24192

Table truncated, full table size 2626 Kbytes.




Supplementary data files not provided
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