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Status
Public on Mar 09, 2004
Title
Control_1.1 (a)
Sample type
RNA
Source name
whole plant, WT Col-0; biological replicate 1 of 3
Organism
Arabidopsis thaliana Extracted molecule
total RNA
Description
Untreated control: biological replicate 1, hybridization 1 (first labeling); scaling factor 2.8. See series file for additional information.
Submission date
Mar 03, 2004
Last update date
Aug 28, 2007
Contact name
Julia C Redman
E-mail(s)
jredman@tigr.org Phone
301-795-7000
URL
http://www.tigr.org Organization name
The Institute for Genomic Research
Department
Plant Genomics
Lab
Christopher Town
Street address
9712 Medical Center Dr
City
Rockville
State/province
MD
ZIP/Postal code
20850
Country
USA
Platform ID
GPL198 Series (2)
GSE1110 Arabidopsis thaliana gene expression in response to IAA challange
GSE1111 Comparison of AG and ATH1 using IAA
Data table header descriptions ID_REF VALUE Intensity for each probe set identifier as calculated by Affymetrix Microarray Suite 5.0. Adjusted to average target signal of 500.
ABS_CALL Qualitative measurement indicating whether the probe set is detected (Present; P), not detected (Absent; A), or marginally detected (Marginal; M), based on p-value calculated for perfect match vs mismatch probe sets
DETECTION P-VALUE Measures the probability that the discrimination scores of all probe pairs in the probe set are above a certain level, indicating hybridization to the target is specific and present.
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
212.8
P
0.001248
AFFX-BioB-M_at
299
P
0.000044
AFFX-BioB-3_at
173.8
P
0.000147
AFFX-BioC-5_at
780.8
P
0.00011
AFFX-BioC-3_at
452.3
P
0.000044
AFFX-BioDn-5_at
723.1
P
0.000044
AFFX-BioDn-3_at
2703.6
P
0.000044
AFFX-CreX-5_at
7105.3
P
0.000044
AFFX-CreX-3_at
10028.9
P
0.000044
AFFX-DapX-5_at
4256.1
P
0.000044
AFFX-DapX-M_at
6177.1
P
0.000044
AFFX-DapX-3_at
8703.7
P
0.000044
AFFX-LysX-5_at
15314.6
P
0.000044
AFFX-LysX-M_at
19679.2
P
0.000044
AFFX-LysX-3_at
16450.4
P
0.000044
AFFX-PheX-5_at
19662
P
0.000044
AFFX-PheX-M_at
20261.7
P
0.000044
AFFX-PheX-3_at
22334.5
P
0.000044
AFFX-ThrX-5_at
55.8
P
0.012547
AFFX-ThrX-M_at
82.9
P
0.000297
22810 589 Kbytes .Supplementary data files not provided
