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Sample GSM1823 Query DataSets for GSM1823
Status Public on Jun 27, 2002
Title E3:_U937_mock_1hb
Sample type RNA
 
Channel 1
Source name U937/AGS ref, 2uL
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name E3: U937 mock 1h
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Pathogen
Subcategory: Salmonella
mock 1h
Scanning Software: GenePix
Software version: 2.1.0.35
Lot batch = shv009
 
Submission date Jun 18, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL182
Series (1)
GSE503 Macrophages infected with Salmonella

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log10 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 0 0 274 49 49 0 0 0 60 60 .916 0 -2.185 .166 10 10 5.592 4.548 .179 .22 .176 372 80 60 70 31 41 -2.185
2 0 0 144 47 47 0 0 0 58 58 .928 0 -1.317 .307 10 98 3.064 2.492 .326 .401 .313 320 80 60 70 46 56 -1.317
3 0 0 54 28 28 0 0 0 34 34 .892 0 -.65 .506 98 92 1.929 1.569 .519 .637 .49 340 80 59 69 61 71 -.65
4 0 0 10 17 17 0 0 0 21 21 .775 0 1.064 1.857 83 90 .588 .478 1.7 2.09 1.089 350 80 59 69 76 86 1.064
5 0 0 48 43 43 0 0 0 53 53 .913 0 .139 .889 10 98 1.116 .908 .896 1.101 .863 359 80 59 69 92 102 .139
6 0 0 368 126 126 0 0 0 155 155 .96 0 -1.248 .333 10 10 2.921 2.376 .342 .421 .34 350 80 59 69 107 117 -1.248
7 0 0 34 19 19 1 0 0 23 23 .854 0 -.542 .604 78 84 1.789 1.456 .559 .687 .463 281 52 58 67 122 131 -.542
8 0 0 14 19 19 1 0 0 23 23 .849 0 .739 1.161 55 82 .737 .599 1.357 1.669 .948 364 80 59 69 136 146 .739
9 0 0 1124 113 113 1 0 0 139 139 .97 0 -3.016 .097 10 93 9.947 8.091 .101 .124 .104 364 80 58 68 152 162 -3.016
10 0 0 40 16 16 1 0 0 20 20 .733 0 -1.024 .429 96 90 2.5 2.033 .4 .492 .315 341 80 58 68 167 177 -1.024
11 0 0 29 101 101 0 0 0 124 124 .903 0 2.098 3.737 10 10 .287 .234 3.483 4.282 2.997 276 52 58 67 181 190 2.098
12 0 0 245 41 41 1 0 0 50 50 .922 0 -2.281 .172 10 98 5.976 4.86 .167 .206 .165 360 80 58 68 196 206 -2.281
13 0 0 43 18 18 1 0 0 22 22 .743 0 -.958 .385 10 96 2.389 1.943 .419 .515 .339 331 80 58 68 211 221 -.958
14 1 0 1154 163 163 2 0 0 200 200 .96 0 -2.526 .14 10 10 7.08 5.759 .141 .174 .137 361 80 58 68 226 236 -2.526
15 2 0 166 48 48 3 0 0 59 59 .914 0 -1.492 .291 10 90 3.458 2.813 .289 .355 .283 290 52 57 66 240 249 -1.492
16 1 0 82 127 127 1 0 0 156 156 .947 0 .929 1.554 97 10 .646 .525 1.549 1.904 1.422 337 80 58 68 256 266 .929
17 0 0 1819 573 573 1 0 0 704 704 .974 0 -1.369 .321 10 10 3.175 2.582 .315 .387 .313 335 80 57 67 271 281 -1.369
18 0 0 44 65 65 1 0 0 80 80 .926 0 .861 1.5 10 10 .677 .551 1.477 1.816 1.427 289 52 57 66 285 294 .861
19 0 0 256 78 78 1 0 0 96 96 .948 0 -1.417 .308 10 10 3.282 2.67 .305 .375 .297 361 80 57 67 301 311 -1.417
20 0 0 90 49 49 1 0 0 60 60 .926 0 -.579 .545 10 10 1.837 1.494 .544 .669 .514 341 80 57 67 316 326 -.579

Total number of rows: 24192

Table truncated, full table size 2566 Kbytes.




Supplementary data files not provided
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