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Sample GSM18231 Query DataSets for GSM18231
Status Public on Mar 09, 2004
Title Control_2.2
Sample type RNA
 
Source name whole plant, WT Col-0; biological replicate 2 of 3
Organism Arabidopsis thaliana
Extracted molecule total RNA
 
Description Untreated control: biological replicate 2, hybridization 2; scaling factor 5.0. See series file for additional information.
Keywords = IAA
Keywords = whole plant
Keywords = indole-3-acetic acid
Lot batch = 2001994
 
Submission date Mar 03, 2004
Last update date Aug 28, 2007
Contact name Julia C Redman
E-mail(s) jredman@tigr.org
Phone 301-795-7000
URL http://www.tigr.org
Organization name The Institute for Genomic Research
Department Plant Genomics
Lab Christopher Town
Street address 9712 Medical Center Dr
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL198
Series (1)
GSE1110 Arabidopsis thaliana gene expression in response to IAA challange

Data table header descriptions
ID_REF
VALUE Intensity for each probe set identifier as calculated by Affymetrix Microarray Suite 5.0. Adjusted to average target signal of 500.
ABS_CALL Qualitative measurement indicating whether the probe set is detected (Present; P), not detected (Absent; A), or marginally detected (Marginal; M), based on p-value calculated for perfect match vs mismatch probe sets
DETECTION P-VALUE Measures the probability that the discrimination scores of all probe pairs in the probe set are above a certain level, indicating hybridization to the target is specific and present.

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 367.6 P 0.000857
AFFX-BioB-M_at 782.6 P 0.00007
AFFX-BioB-3_at 313.4 P 0.000169
AFFX-BioC-5_at 1288.6 P 0.000297
AFFX-BioC-3_at 837.3 P 0.00007
AFFX-BioDn-5_at 1181.9 P 0.000044
AFFX-BioDn-3_at 4940.2 P 0.000052
AFFX-CreX-5_at 12953.6 P 0.000044
AFFX-CreX-3_at 16461.9 P 0.000044
AFFX-DapX-5_at 847.2 P 0.000052
AFFX-DapX-M_at 2636.7 P 0.000052
AFFX-DapX-3_at 5296.7 P 0.000044
AFFX-LysX-5_at 13676.5 P 0.000044
AFFX-LysX-M_at 21171.1 P 0.000044
AFFX-LysX-3_at 20178.2 P 0.000044
AFFX-PheX-5_at 28138 P 0.000044
AFFX-PheX-M_at 30128.9 P 0.000044
AFFX-PheX-3_at 33442.1 P 0.000044
AFFX-ThrX-5_at 4.3 A 0.897835
AFFX-ThrX-M_at 19.9 A 0.617401

Total number of rows: 22810

Table truncated, full table size 589 Kbytes.




Supplementary data files not provided

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