GEO help: Mouse over screen elements for information.
Status
Public on Mar 09, 2004
Title
0.1uM_IAA_3h_1.2
Sample type
RNA
Source name
whole plant, WT Col-0; biological replicate 1 of 2
Organism
Arabidopsis thaliana Extracted molecule
total RNA
Description
Exposure to 0.1micromolar IAA for 3h prior to harvest; biological replicate 1, hybridization 2; scaling factor 3.6. See series file for additional information.
Submission date
Mar 04, 2004
Last update date
Aug 28, 2007
Contact name
Julia C Redman
E-mail(s)
jredman@tigr.org Phone
301-795-7000
URL
http://www.tigr.org Organization name
The Institute for Genomic Research
Department
Plant Genomics
Lab
Christopher Town
Street address
9712 Medical Center Dr
City
Rockville
State/province
MD
ZIP/Postal code
20850
Country
USA
Platform ID
GPL198 Series (2)
GSE1110 Arabidopsis thaliana gene expression in response to IAA challange
GSE1111 Comparison of AG and ATH1 using IAA
Data table header descriptions ID_REF VALUE Intensity for each probe set identifier as calculated by Affymetrix Microarray Suite 5.0. Adjusted to average target signal of 500.
ABS_CALL Qualitative measurement indicating whether the probe set is detected (Present; P), not detected (Absent; A), or marginally detected (Marginal; M), based on p-value calculated for perfect match vs mismatch probe sets
DETECTION P-VALUE Measures the probability that the discrimination scores of all probe pairs in the probe set are above a certain level, indicating hybridization to the target is specific and present.
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
248.6
P
0.003212
AFFX-BioB-M_at
318.2
P
0.000044
AFFX-BioB-3_at
191.1
P
0.00039
AFFX-BioC-5_at
679.9
P
0.000169
AFFX-BioC-3_at
417.8
P
0.00011
AFFX-BioDn-5_at
776.2
P
0.000044
AFFX-BioDn-3_at
2634.8
P
0.000044
AFFX-CreX-5_at
7612
P
0.000044
AFFX-CreX-3_at
11756.6
P
0.000044
AFFX-DapX-5_at
2238.1
P
0.000044
AFFX-DapX-M_at
3955.4
P
0.000044
AFFX-DapX-3_at
6634.2
P
0.000044
AFFX-LysX-5_at
16988.5
P
0.000044
AFFX-LysX-M_at
23389
P
0.000044
AFFX-LysX-3_at
18963
P
0.000044
AFFX-PheX-5_at
24066.3
P
0.000044
AFFX-PheX-M_at
24441.5
P
0.000044
AFFX-PheX-3_at
28342.7
P
0.000052
AFFX-ThrX-5_at
4.8
A
0.617401
AFFX-ThrX-M_at
58.3
M
0.058444
22810 589 Kbytes .Supplementary data files not provided
