NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM18297 Query DataSets for GSM18297
Status Public on Mar 09, 2004
Title 0.1uM_IAA_3h_2.2
Sample type RNA
 
Source name whole plant, WT Col-0; biological replicate 2 of 2
Organism Arabidopsis thaliana
Extracted molecule total RNA
 
Description Exposure to 0.1micromolar IAA for 3h prior to harvest; biological replicate 2, hybridization 2; scaling factor 4.5. See series file for additional information.
Keywords = IAA
Keywords = whole plant
Keywords = indole-3-acetic acid
Lot batch = 2001994
 
Submission date Mar 04, 2004
Last update date Aug 28, 2007
Contact name Julia C Redman
E-mail(s) jredman@tigr.org
Phone 301-795-7000
URL http://www.tigr.org
Organization name The Institute for Genomic Research
Department Plant Genomics
Lab Christopher Town
Street address 9712 Medical Center Dr
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL198
Series (1)
GSE1110 Arabidopsis thaliana gene expression in response to IAA challange

Data table header descriptions
ID_REF
VALUE Intensity for each probe set identifier as calculated by Affymetrix Microarray Suite 5.0. Adjusted to average target signal of 500.
ABS_CALL Qualitative measurement indicating whether the probe set is detected (Present; P), not detected (Absent; A), or marginally detected (Marginal; M), based on p-value calculated for perfect match vs mismatch probe sets
DETECTION P-VALUE Measures the probability that the discrimination scores of all probe pairs in the probe set are above a certain level, indicating hybridization to the target is specific and present.

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 558.3 P 0.003595
AFFX-BioB-M_at 592.6 P 0.000052
AFFX-BioB-3_at 434.9 P 0.001593
AFFX-BioC-5_at 1405.8 P 0.000169
AFFX-BioC-3_at 847.7 P 0.000095
AFFX-BioDn-5_at 1234.3 P 0.000044
AFFX-BioDn-3_at 5575.1 P 0.000052
AFFX-CreX-5_at 12264.1 P 0.000044
AFFX-CreX-3_at 16639.9 P 0.000044
AFFX-DapX-5_at 635 P 0.000095
AFFX-DapX-M_at 2113.4 P 0.00007
AFFX-DapX-3_at 3519.1 P 0.000044
AFFX-LysX-5_at 17744.4 P 0.000044
AFFX-LysX-M_at 25418.9 P 0.000044
AFFX-LysX-3_at 23301.6 P 0.000044
AFFX-PheX-5_at 28217 P 0.000044
AFFX-PheX-M_at 30646.7 P 0.000044
AFFX-PheX-3_at 32542.6 P 0.000044
AFFX-ThrX-5_at 20.5 A 0.712257
AFFX-ThrX-M_at 27 A 0.699394

Total number of rows: 22810

Table truncated, full table size 591 Kbytes.




Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap