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Sample GSM18298 Query DataSets for GSM18298
Status Public on Mar 09, 2004
Title 1.0uM_IAA_1h_1.1
Sample type RNA
 
Source name whole plant, WT Col-0; biological replicate 1 of 2
Organism Arabidopsis thaliana
Extracted molecule total RNA
 
Description Exposure to 1.0micromolar IAA for 1h prior to harvest; biological replicate 1, hybridization 1; scaling factor 4.3. See series file for additional information.
Keywords = IAA
Keywords = whole plant
Keywords = indole-3-acetic acid
Lot batch = 2001994
 
Submission date Mar 04, 2004
Last update date Aug 28, 2007
Contact name Julia C Redman
E-mail(s) jredman@tigr.org
Phone 301-795-7000
URL http://www.tigr.org
Organization name The Institute for Genomic Research
Department Plant Genomics
Lab Christopher Town
Street address 9712 Medical Center Dr
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL198
Series (1)
GSE1110 Arabidopsis thaliana gene expression in response to IAA challange

Data table header descriptions
ID_REF
VALUE Intensity for each probe set identifier as calculated by Affymetrix Microarray Suite 5.0. Adjusted to average target signal of 500.
ABS_CALL Qualitative measurement indicating whether the probe set is detected (Present; P), not detected (Absent; A), or marginally detected (Marginal; M), based on p-value calculated for perfect match vs mismatch probe sets
DETECTION P-VALUE Measures the probability that the discrimination scores of all probe pairs in the probe set are above a certain level, indicating hybridization to the target is specific and present.

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 247.4 P 0.003212
AFFX-BioB-M_at 377.2 P 0.00007
AFFX-BioB-3_at 282.7 P 0.000127
AFFX-BioC-5_at 1121.9 P 0.000147
AFFX-BioC-3_at 621.5 P 0.00007
AFFX-BioDn-5_at 1099.1 P 0.000044
AFFX-BioDn-3_at 4053.2 P 0.000044
AFFX-CreX-5_at 9583.6 P 0.000044
AFFX-CreX-3_at 15388.1 P 0.000044
AFFX-DapX-5_at 607.5 P 0.00007
AFFX-DapX-M_at 1913.7 P 0.00007
AFFX-DapX-3_at 4124.5 P 0.000044
AFFX-LysX-5_at 16014.1 P 0.000044
AFFX-LysX-M_at 23870.7 P 0.000044
AFFX-LysX-3_at 20855.2 P 0.000044
AFFX-PheX-5_at 27324.2 P 0.000044
AFFX-PheX-M_at 29581.2 P 0.000044
AFFX-PheX-3_at 31534.2 P 0.000044
AFFX-ThrX-5_at 2.5 A 0.910522
AFFX-ThrX-M_at 26.6 A 0.794268

Total number of rows: 22810

Table truncated, full table size 589 Kbytes.




Supplementary data files not provided

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