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Sample GSM1833 Query DataSets for GSM1833
Status Public on Jun 27, 2002
Title E3:_U937_phoP_4hb
Sample type RNA
 
Channel 1
Source name U937/AGS ref, 2uL
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name E3:_U937_phoP_4h
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Pathogen
Subcategory: Salmonella
E3:_U937_phoP_4h
Scanning Software: GenePix
Software version: 2.1.0.35
Lot batch = shz045
 
Submission date Jun 18, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL178
Series (1)
GSE503 Macrophages infected with Salmonella

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log10 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 16 15 1051 708 672 39 36 16 305 322 .89 0 -1.783 .653 97 97 1.564 3.441 .639 .291 .574 417 80 31 41 36 46 -1.783
2 16 15 575 802 764 57 38 17 347 365 .79 0 -.727 1.281 98 86 .753 1.656 1.329 .604 1.23 338 80 31 41 51 61 -.727
3 16 14 507 849 810 58 39 18 368 386 .67 0 -.462 1.143 98 90 .626 1.377 1.598 .726 1.75 338 80 31 41 66 76 -.462
4 15 14 215 469 435 37 34 15 198 213 .87 0 -.121 1.842 87 93 .494 1.087 2.023 .92 1.829 323 80 31 41 81 91 -.121
5 15 15 353 724 686 41 38 17 312 329 .89 0 -.179 1.747 91 97 .515 1.132 1.943 .883 1.746 338 80 31 41 95 105 -.179
6 17 14 1529 2056 2016 42 40 18 916 935 .92 0 -.739 1.194 100 100 .758 1.669 1.319 .599 1.291 392 80 30 41 110 121 -.739
7 18 15 752 1037 997 45 40 18 453 471 .84 0 -.731 1.325 100 100 .754 1.659 1.326 .603 1.22 239 52 32 40 125 133 -.731
8 20 15 720 1690 1652 48 38 17 751 768 .89 0 .061 2.167 100 100 .436 .959 2.294 1.043 2.109 312 52 30 39 140 149 .061
9 20 17 6183 3316 3275 48 41 19 1489 1507 .88 0 -2.054 .473 100 100 1.888 4.153 .53 .241 .499 344 80 31 41 155 165 -2.054
10 20 20 401 987 946 44 41 19 430 449 .8 0 .101 2.019 92 96 .424 .933 2.359 1.072 2.208 359 80 30 40 170 180 .101
11 32 20 653 6040 5999 69 41 19 2727 2745 .81 0 2.062 10.33 91 95 .109 .239 9.187 4.176 6.136 364 80 30 40 185 195 2.062
12 24 20 2260 2372 2332 52 40 18 1060 1078 .87 0 -1.092 .955 96 97 .969 2.132 1.032 .469 .96 353 80 30 40 200 210 -1.092
13 31 23 1043 1856 1814 58 42 19 825 844 .92 0 -.339 1.795 96 98 .575 1.265 1.739 .791 1.606 311 52 30 39 214 223 -.339
14 40 28 6100 5492 5448 62 44 20 2476 2496 .94 0 -1.301 .895 100 100 1.12 2.463 .893 .406 .848 334 52 30 39 230 239 -1.301
15 29 24 1373 3126 3083 51 43 20 1401 1421 .88 0 .029 2.084 100 100 .445 .98 2.245 1.021 2.178 385 80 30 40 246 256 .029
16 25 23 1032 3386 3338 53 48 22 1517 1539 .9 0 .556 3.331 100 100 .309 .68 3.234 1.47 3.003 312 52 30 39 261 270 .556
17 26 22 6108 8313 8271 51 42 19 3760 3779 .92 0 -.7 1.332 100 100 .738 1.625 1.354 .616 1.246 394 80 30 40 277 287 -.7
18 121 23 506 1934 1887 186 47 21 858 879 .91 0 .761 3.608 48 92 .268 .59 3.729 1.695 3.328 318 52 30 39 291 300 .761
19 108 18 3144 2460 2412 162 48 22 1096 1118 .9 0 -1.52 .685 90 78 1.303 2.868 .767 .349 .704 291 52 30 38 308 316 -1.52
20 42 19 908 1918 1875 92 43 20 852 872 .91 0 -.091 1.867 88 92 .484 1.065 2.065 .939 1.883 325 52 30 39 324 333 -.091

Total number of rows: 24192

Table truncated, full table size 2891 Kbytes.




Supplementary data files not provided

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