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Sample GSM1834 Query DataSets for GSM1834
Status Public on Jun 27, 2002
Title E3:_U937_phoP_0.5hb
Sample type RNA
 
Channel 1
Source name U937/AGS ref, 2uL
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name E3:_U937_phoP_0.5h
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Pathogen
Subcategory: Salmonella
E3:_U937_phoP_0.5h
Scanning Software: GenePix
Software version: 2.1.0.35
Lot batch = shz066
 
Submission date Jun 18, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL178
Series (1)
GSE503 Macrophages infected with Salmonella

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log10 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 31 27 2076 2094 2014 82 80 41 1028 1068 .97 0 -1.015 .935 100 100 1.031 2.02 .97 .495 .961 337 52 51 60 34 43 -1.015
2 30 28 1693 2547 2465 84 82 42 1258 1299 .94 0 -.429 1.39 100 100 .687 1.346 1.456 .743 1.43 254 52 52 60 50 58 -.429
3 28 27 930 1603 1527 80 76 39 779 818 .94 0 -.255 1.574 100 100 .609 1.194 1.642 .838 1.522 353 80 51 61 64 74 -.255
4 32 29 392 1145 1069 191 76 39 545 584 .92 0 .476 2.541 96 17 .367 .719 2.727 1.391 2.648 341 80 51 61 79 89 .476
5 32 29 716 1800 1723 85 77 39 879 918 .94 0 .296 2.22 100 100 .416 .814 2.406 1.228 2.489 357 80 51 61 94 104 .296
6 33 29 1973 3316 3235 86 81 41 1651 1692 .97 0 -.257 1.621 100 100 .61 1.195 1.64 .837 1.557 358 80 51 61 109 119 -.257
7 33 32 1042 1466 1383 84 83 42 706 748 .97 0 -.562 1.308 100 100 .753 1.477 1.327 .677 1.227 254 52 52 60 125 133 -.562
8 33 30 951 1570 1494 79 76 39 762 801 .95 0 -.319 1.53 100 100 .637 1.248 1.571 .802 1.42 312 52 51 60 139 148 -.319
9 31 28 8761 3979 3902 79 77 39 1991 2030 .97 0 -2.138 .446 100 100 2.245 4.401 .445 .227 .426 301 52 51 60 154 163 -2.138
10 35 28 512 741 662 91 79 40 338 378 .91 0 -.6 1.283 96 94 .773 1.516 1.293 .66 1.387 305 52 50 59 168 177 -.6
11 42 31 450 2118 2040 104 78 40 1041 1081 .96 0 1.21 4.592 100 100 .221 .432 4.533 2.313 4.498 316 52 50 59 183 192 1.21
12 47 32 2402 1748 1666 108 82 42 850 892 .94 0 -1.499 .67 100 100 1.442 2.826 .694 .354 .69 326 52 50 59 198 207 -1.499
13 46 33 795 1328 1247 96 81 41 636 678 .95 0 -.321 1.639 100 100 .638 1.25 1.569 .8 1.535 314 52 50 59 214 223 -.321
14 58 34 5702 3087 3012 94 75 38 1537 1575 .97 0 -1.892 .519 100 100 1.893 3.71 .528 .27 .53 315 52 50 59 228 237 -1.892
15 52 31 816 1381 1299 97 82 42 663 705 .93 0 -.3 1.528 97 98 .628 1.231 1.592 .812 1.617 374 80 50 60 245 255 -.3
16 34 32 783 2202 2122 84 80 41 1083 1123 .96 0 .467 2.696 98 100 .369 .723 2.71 1.383 2.567 344 80 50 60 260 270 .467
17 36 32 5659 8116 8035 84 81 41 4099 4141 .98 0 -.465 1.401 100 100 .704 1.38 1.42 .724 1.351 366 80 50 60 275 285 -.465
18 34 31 325 1236 1155 86 81 41 589 631 .96 0 .859 3.608 98 100 .281 .552 3.554 1.813 3.409 379 80 50 60 291 301 .859
19 34 30 2701 1879 1801 89 78 40 919 959 .96 0 -1.556 .665 100 100 1.5 2.939 .667 .34 .626 314 52 50 59 306 315 -1.556
20 38 33 765 1329 1243 91 86 44 634 678 .96 0 -.271 1.654 100 100 .615 1.206 1.625 .829 1.615 316 52 50 59 322 331 -.271

Total number of rows: 24192

Table truncated, full table size 2917 Kbytes.




Supplementary data files not provided
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