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Sample GSM1842 Query DataSets for GSM1842
Status Public on Jun 27, 2002
Title E6:_U937_phoP_0.5h
Sample type RNA
 
Channel 1
Source name U937/AGS ref, 2uL, 1st strand label
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name E6:_U937_phoP_0.5h, 1st strand label
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Pathogen
Subcategory: Salmonella
E6:_U937_phoP_0.5h
Scanning Software: GenePix
Software version: Pro
Lot batch = shz054
 
Submission date Jun 18, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL178
Series (1)
GSE503 Macrophages infected with Salmonella

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log10 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 125 121 2467 4871 4642 241 229 191 3868 4059 .96 0 .649 1.879 100 100 .531 .638 1.882 1.568 1.819 286 52 92 100 113 121 .649
2 126 124 2040 2011 1779 241 232 193 1483 1676 .95 0 -.461 .845 100 100 1.147 1.376 .872 .727 .881 272 52 92 100 129 137 -.461
3 127 126 970 1413 1173 247 240 200 978 1178 .93 0 .011 1.197 100 98 .827 .992 1.209 1.008 1.12 264 52 91 99 143 151 .011
4 127 126 224 476 234 249 242 202 195 397 .74 0 -.2 1.118 90 86 .957 1.149 1.045 .871 .885 263 52 92 100 158 166 -.2
5 127 124 387 852 622 237 230 192 518 710 .9 0 .422 1.545 98 96 .622 .747 1.607 1.339 1.581 293 52 91 99 174 182 .422
6 126 122 2615 4363 4135 237 228 190 3446 3636 .97 0 .398 1.591 100 100 .632 .759 1.581 1.318 1.54 330 52 90 99 188 197 .398
7 128 124 1203 1374 1136 243 238 198 947 1145 .91 0 -.346 .999 96 96 1.059 1.271 .944 .787 .882 212 32 91 98 203 210 -.346
8 127 125 413 793 555 240 238 198 463 661 .89 0 .163 1.354 100 100 .744 .893 1.344 1.12 1.23 218 32 92 99 218 225 .163
9 124 122 13709 12094 11858 242 236 197 9882 10078 .98 0 -.472 .864 100 100 1.156 1.387 .865 .721 .853 285 52 92 100 233 241 -.472
10 137 125 375 608 369 251 239 199 308 507 .71 0 -.286 1.045 96 96 1.016 1.22 .984 .82 .801 214 32 91 98 248 255 -.286
11 129 122 504 20770 20535 251 235 196 17113 17308 .95 0 5.085 40.53 100 100 .025 .029 40.744 33.953 36.873 328 52 90 99 262 271 5.085
12 129 124 8144 1559 1325 251 234 195 1104 1299 .95 0 -2.883 .164 100 98 6.146 7.376 .163 .136 .162 296 52 91 99 278 286 -2.883
13 135 122 1963 2089 1867 244 222 185 1556 1741 .96 0 -.335 .956 96 93 1.051 1.262 .951 .793 .937 160 32 92 98 296 302 -.335
14 291 119 7359 7968 7727 412 241 201 6439 6640 .97 0 -.193 1.057 96 100 .952 1.143 1.05 .875 1.021 202 32 90 97 307 314 -.193
15 123 108 671 550 319 254 231 193 266 458 .7 0 -1.336 .476 100 78 2.103 2.524 .475 .396 .513 366 52 90 99 322 331 -1.336
16 110 105 1087 7703 7492 231 211 176 6243 6419 .94 0 2.522 7.02 92 96 .145 .174 6.892 5.744 6.405 271 52 90 98 340 348 2.522
17 146 114 5266 8352 8120 245 232 193 6767 6960 .98 0 .362 1.554 97 100 .649 .778 1.542 1.285 1.531 381 80 90 100 353 363 .362
18 117 114 465 7852 7622 240 230 192 6352 6543 .94 0 3.772 16.917 100 100 .061 .073 16.391 13.659 15.342 302 52 90 99 367 376 3.772
19 117 112 5189 6022 5798 237 224 187 4832 5018 .97 0 -.103 1.119 100 94 .895 1.074 1.117 .931 1.089 274 52 91 99 382 390 -.103
20 108 106 959 2110 1891 233 219 183 1576 1758 .96 0 .717 2.04 100 100 .507 .609 1.972 1.643 1.971 276 52 91 99 397 405 .717

Total number of rows: 24192

Table truncated, full table size 3003 Kbytes.




Supplementary data files not provided
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