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GEO accession:
Sample GSM185013
Query DataSets for GSM185013
Status
Public on May 01, 2008
Title
Spleen_ko_4m_rep2
Sample type
RNA
Source name
Mouse spleen at 4 month
Organism
Mus musculus
Characteristics
Male BALB/c deficient in Il1rn
Extracted molecule
total RNA
Extraction protocol
Trizol
Label
Biotin
Label protocol
Standard Affymetrix protocol
Hybridization protocol
Standard Affymetrix protocol with Fluidics Station 450
Scan protocol
Standard Affymetrix protocol with GeneChip Scanner 3000
Description
Gene expression data
Data processing
The data were analyzed with Expressiojn Console 1.1 using default MAS5 method. The target intensity was 500.
Submission date
Apr 26, 2007
Last update date
Aug 28, 2018
Contact name
Jian Yan
E-mail(s)
jyan1@utmem.edu
Phone
901-448-7830
Organization name
University of Tennessee Health Science Center
Department
Orthopedics Surgery
Lab
Weikuan Gu
Street address
956 Court Ave
City
Memphis
State/province
TN
ZIP/Postal code
38163
Country
USA
Platform ID
GPL1261
Series (1)
GSE7657
Identification of phase-specific arthritis-related genes in mice
Relations
Reanalyzed by
GSE119085
Data table header descriptions
ID_REF
VALUE
MAS5-calculated signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P) , absent (A) , or marginal (M)
DETECTION P-VALUE
P value that indicates the significance levell of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
144.0149
P
0.004017214
AFFX-BioB-M_at
212.6293
P
7.01E-05
AFFX-BioB-3_at
150.8083
P
0.000580637
AFFX-BioC-5_at
588.049
P
5.17E-05
AFFX-BioC-3_at
963.7148
P
0.00010954
AFFX-BioDn-5_at
1129.804
P
7.01E-05
AFFX-BioDn-3_at
2636.842
P
0.000126798
AFFX-CreX-5_at
7939.389
P
5.17E-05
AFFX-CreX-3_at
10318.91
P
4.43E-05
AFFX-DapX-5_at
9.799201
A
0.5445875
AFFX-DapX-M_at
25.45482
A
0.4702405
AFFX-DapX-3_at
5.040208
A
0.8686389
AFFX-LysX-5_at
1.055886
A
0.9219982
AFFX-LysX-M_at
6.860774
A
0.6593388
AFFX-LysX-3_at
3.935459
A
0.7122569
AFFX-PheX-5_at
0.9425659
A
0.9015336
AFFX-PheX-M_at
2.866753
A
0.9043331
AFFX-PheX-3_at
8.837287
A
0.5148901
AFFX-ThrX-5_at
2.491388
A
0.9457867
AFFX-ThrX-M_at
10.87865
A
0.4554125
Total number of rows:
45101
Table truncated, full table size
1434 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM185013.CEL.gz
3.6 Mb
(ftp)
(http)
CEL
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