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Sample GSM185016 Query DataSets for GSM185016
Status Public on Oct 02, 2007
Title DIO Vehicle 2
Sample type RNA
 
Source name Vehicle treated liver from C57BL/6J DIO mice.
Organism Mus musculus
Characteristics Male C57BL/6J mice (Jackson Laboratories) were housed on a 12-hour light-dark cycle and were allowed free access to water and standard laboratory chow or high fat diet (Research Diet D12450Bi, D12492i) for 22-24 weeks. Animals were fed ad libitum and were sacrificed at day 5 after injection.
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from pulverized liver tissues using Qiagen RNeasy 96 Universal Tissue 8000 Kit.
Label biotin
Label protocol Enzo Biochem
 
Hybridization protocol Midi_euk2v3
Scan protocol Scan protocol: GeneChips were scanned using an Affymetrix GeneChip Scanner 3000
Description Vehicle treated liver from C57BL/6J DIO mice.
Data processing Rosetta Resolver 6.0
 
Submission date Apr 26, 2007
Last update date Mar 18, 2009
Contact name Paul M Jung
E-mail(s) paul.jung@abbott.com
Phone 847-938-0156
Organization name Abbott Laboratories
Department Gene Expression Analysis
Lab R4CT
Street address 100 Abbott Park Road
City Abbott Park
State/province IL
ZIP/Postal code 60064
Country USA
 
Platform ID GPL8321
Series (1)
GSE7648 Liver-specific knockdown of JNK1

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 75.6045 P 0.000972149
AFFX-BioB-M_at 99.1453 P 0.000389797
AFFX-BioB-3_at 60.1032 P 0.000662269
AFFX-BioC-5_at 209.746 P 6.02111e-05
AFFX-BioC-3_at 293.993 P 4.42873e-05
AFFX-BioDn-5_at 466.851 P 5.16732e-05
AFFX-BioDn-3_at 1225.31 P 8.14279e-05
AFFX-CreX-5_at 2522.17 P 5.16732e-05
AFFX-CreX-3_at 3106.3 P 4.42873e-05
AFFX-DapX-5_at 1.24336 A 0.58862
AFFX-DapX-M_at 13.3735 A 0.262827
AFFX-DapX-3_at 6.09761 A 0.724871
AFFX-LysX-5_at 2.58788 A 0.216524
AFFX-LysX-M_at 7.36961 A 0.699394
AFFX-LysX-3_at 6.33675 A 0.123572
AFFX-PheX-5_at 0.630991 A 0.883908
AFFX-PheX-M_at 0.618121 A 0.957038
AFFX-PheX-3_at 2.6506 A 0.60308
AFFX-ThrX-5_at 1.54854 A 0.749204
AFFX-ThrX-M_at 1.47602 A 0.712257

Total number of rows: 22690

Table truncated, full table size 701 Kbytes.




Supplementary file Size Download File type/resource
GSM185016.CEL.gz 2.2 Mb (ftp)(http) CEL
GSM185016.CHP.gz 122.6 Kb (ftp)(http) CHP
Processed data provided as supplementary file

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