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Sample GSM185026 Query DataSets for GSM185026
Status Public on Oct 02, 2007
Title Jnk1 Adv-shRNA 3
Sample type RNA
 
Source name Jnk1 Adv-shRNA treated liver from C57BL/6J DIO mice.
Organism Mus musculus
Characteristics Male C57BL/6J mice (Jackson Laboratories) were housed on a 12-hour light-dark cycle and were allowed free access to water and standard laboratory chow or high fat diet (Research Diet D12450Bi, D12492i) for 22-24 weeks. Adenoviruses were purified and diluted in saline solution, and 2E11 viral particles were delivered into the animals by a single tail-vein injection on day zero. Animals were fed ad libitum and were sacrificed at day 5 after adenovirus injection.
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from pulverized liver tissues using Qiagen RNeasy 96 Universal Tissue 8000 Kit.
Label biotin
Label protocol Enzo Biochem
 
Hybridization protocol Midi_euk2v3
Scan protocol Scan protocol: GeneChips were scanned using an Affymetrix GeneChip Scanner 3000
Description Jnk1 Adv-shRNA treated liver from C57BL/6J DIO mice.
Data processing Rosetta Resolver 6.0
 
Submission date Apr 26, 2007
Last update date Mar 18, 2009
Contact name Paul M Jung
E-mail(s) paul.jung@abbott.com
Phone 847-938-0156
Organization name Abbott Laboratories
Department Gene Expression Analysis
Lab R4CT
Street address 100 Abbott Park Road
City Abbott Park
State/province IL
ZIP/Postal code 60064
Country USA
 
Platform ID GPL8321
Series (1)
GSE7648 Liver-specific knockdown of JNK1

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 53.7263 P 0.00159257
AFFX-BioB-M_at 81.3895 P 0.00141043
AFFX-BioB-3_at 27.4969 P 0.0044838
AFFX-BioC-5_at 162.027 P 0.00010954
AFFX-BioC-3_at 189.279 P 6.02111e-05
AFFX-BioDn-5_at 317.224 P 5.16732e-05
AFFX-BioDn-3_at 879.835 P 0.000169227
AFFX-CreX-5_at 1724.64 P 5.16732e-05
AFFX-CreX-3_at 2152.62 P 4.42873e-05
AFFX-DapX-5_at 1.06226 A 0.544587
AFFX-DapX-M_at 7.23077 A 0.340661
AFFX-DapX-3_at 7.60135 A 0.5
AFFX-LysX-5_at 3.13981 A 0.48511
AFFX-LysX-M_at 9.92823 A 0.382599
AFFX-LysX-3_at 6.7489 A 0.156732
AFFX-PheX-5_at 1.89554 A 0.737173
AFFX-PheX-M_at 0.544176 A 0.876428
AFFX-PheX-3_at 7.29076 A 0.52976
AFFX-ThrX-5_at 1.12548 A 0.916408
AFFX-ThrX-M_at 1.90993 A 0.672921

Total number of rows: 22690

Table truncated, full table size 703 Kbytes.




Supplementary file Size Download File type/resource
GSM185026.CEL.gz 2.3 Mb (ftp)(http) CEL
GSM185026.CHP.gz 122.4 Kb (ftp)(http) CHP
Processed data provided as supplementary file

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