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GEO accession:
Sample GSM185032
Query DataSets for GSM185032
Status
Public on May 01, 2008
Title
Spleen_wt_4m_rep1
Sample type
RNA
Source name
Mouse spleen at 4 month
Organism
Mus musculus
Characteristics
Male wild-type BALB/c
Extracted molecule
total RNA
Extraction protocol
Trizol
Label
Biotin
Label protocol
Standard Affymetrix protocol
Hybridization protocol
Standard Affymetrix protocol with Fluidics Station 450
Scan protocol
Standard Affymetrix protocol with GeneChip Scanner 3000
Description
Gene expression data
Data processing
The data were analyzed with Expressiojn Console 1.1 using default MAS5 method. The target intensity was 500.
Submission date
Apr 26, 2007
Last update date
Aug 28, 2018
Contact name
Jian Yan
E-mail(s)
jyan1@utmem.edu
Phone
901-448-7830
Organization name
University of Tennessee Health Science Center
Department
Orthopedics Surgery
Lab
Weikuan Gu
Street address
956 Court Ave
City
Memphis
State/province
TN
ZIP/Postal code
38163
Country
USA
Platform ID
GPL1261
Series (1)
GSE7657
Identification of phase-specific arthritis-related genes in mice
Relations
Reanalyzed by
GSE119085
Data table header descriptions
ID_REF
VALUE
MAS5-calculated signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P) , absent (A) , or marginal (M)
DETECTION P-VALUE
P value that indicates the significance levell of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
356.0653
P
0.007620031
AFFX-BioB-M_at
423.8721
P
4.43E-05
AFFX-BioB-3_at
345.161
P
0.009337437
AFFX-BioC-5_at
1330.352
P
6.02E-05
AFFX-BioC-3_at
1444.042
P
7.01E-05
AFFX-BioDn-5_at
1731.919
P
4.43E-05
AFFX-BioDn-3_at
4324.779
P
4.43E-05
AFFX-CreX-5_at
15936.9
P
4.43E-05
AFFX-CreX-3_at
20207.89
P
5.17E-05
AFFX-DapX-5_at
18.10341
A
0.6455473
AFFX-DapX-M_at
27.36617
A
0.7492043
AFFX-DapX-3_at
64.94724
A
0.275146
AFFX-LysX-5_at
5.245996
A
0.9323386
AFFX-LysX-M_at
44.50276
A
0.7122569
AFFX-LysX-3_at
52.99659
A
0.1952664
AFFX-PheX-5_at
3.908619
A
0.9715427
AFFX-PheX-M_at
6.60839
A
0.9634309
AFFX-PheX-3_at
50.81707
A
0.313723
AFFX-ThrX-5_at
11.19705
A
0.9634309
AFFX-ThrX-M_at
2.866552
A
0.973889
Total number of rows:
45101
Table truncated, full table size
1423 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM185032.CEL.gz
3.3 Mb
(ftp)
(http)
CEL
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