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GEO accession:
Sample GSM185033
Query DataSets for GSM185033
Status
Public on May 01, 2008
Title
Spleen_wt_4m_rep2
Sample type
RNA
Source name
Mouse spleen at 4 month
Organism
Mus musculus
Characteristics
Male wild-type BALB/c
Extracted molecule
total RNA
Extraction protocol
Trizol
Label
Biotin
Label protocol
Standard Affymetrix protocol
Hybridization protocol
Standard Affymetrix protocol with Fluidics Station 450
Scan protocol
Standard Affymetrix protocol with GeneChip Scanner 3000
Description
Gene expression data
Data processing
The data were analyzed with Expressiojn Console 1.1 using default MAS5 method. The target intensity was 500.
Submission date
Apr 26, 2007
Last update date
Aug 28, 2018
Contact name
Jian Yan
E-mail(s)
jyan1@utmem.edu
Phone
901-448-7830
Organization name
University of Tennessee Health Science Center
Department
Orthopedics Surgery
Lab
Weikuan Gu
Street address
956 Court Ave
City
Memphis
State/province
TN
ZIP/Postal code
38163
Country
USA
Platform ID
GPL1261
Series (1)
GSE7657
Identification of phase-specific arthritis-related genes in mice
Relations
Reanalyzed by
GSE119085
Data table header descriptions
ID_REF
VALUE
MAS5-calculated signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P) , absent (A) , or marginal (M)
DETECTION P-VALUE
P value that indicates the significance levell of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
203.2901
P
0.001795911
AFFX-BioB-M_at
297.4827
P
0.000195116
AFFX-BioB-3_at
228.9953
P
0.003212301
AFFX-BioC-5_at
763.2434
P
6.02E-05
AFFX-BioC-3_at
925.8813
P
4.43E-05
AFFX-BioDn-5_at
1429.173
P
6.02E-05
AFFX-BioDn-3_at
2853.763
P
7.01E-05
AFFX-CreX-5_at
10277.69
P
4.43E-05
AFFX-CreX-3_at
14361.45
P
5.17E-05
AFFX-DapX-5_at
12.59042
A
0.5740377
AFFX-DapX-M_at
31.67508
A
0.2165241
AFFX-DapX-3_at
4.317999
A
0.9663227
AFFX-LysX-5_at
1.286329
A
0.9964079
AFFX-LysX-M_at
8.314555
A
0.8686389
AFFX-LysX-3_at
10.40002
A
0.5297595
AFFX-PheX-5_at
3.15553
A
0.9323215
AFFX-PheX-M_at
16.25146
A
0.8605175
AFFX-PheX-3_at
11.2758
A
0.5886198
AFFX-ThrX-5_at
2.827764
A
0.9985896
AFFX-ThrX-M_at
4.849413
A
0.8910214
Total number of rows:
45101
Table truncated, full table size
1429 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM185033.CEL.gz
3.3 Mb
(ftp)
(http)
CEL
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