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Sample GSM185509 Query DataSets for GSM185509
Status Public on Jul 28, 2007
Title Affymetrix Gene Expression profiling of adult mouse brain
Sample type RNA
 
Source name Total RNA from adult mouse brain cells
Organism Mus musculus
Characteristics Sample of mouse adult tissue was dissected out from 10-12 week old wild-type BL6 female mouse
Extracted molecule total RNA
Extraction protocol Total RNA from each mouse tissue was extracted using Trizol. reagent (Invitrogen, Carlsbad, CA) and further purified using RNeasy Mini Kit (Qiagen, Valencia, CA) according to manufacturer recommendations
Label biotin
Label protocol biotinylation
 
Hybridization protocol Affymetrix total RNA hybridization protocol
Scan protocol Affymetrix scan protocol
Description Total RNA from adult mouse brain, 10-12 weeks
Data processing Affymetrix GCOS software
 
Submission date Apr 27, 2007
Last update date Aug 28, 2018
Contact name Bing Ren
E-mail(s) biren@ucsd.edu
Organization name Ludwig Institute for Cancer Research
Department Department of Cellular and Molecular Medicine
Lab Laboratory of Gene Regulation
Street address 9500 Gilman Drive
City La Jolla
State/province CA
ZIP/Postal code 92093-0653
Country USA
 
Platform ID GPL1261
Series (1)
GSE7688 Genome-wide mapping and analysis of active promoters in mouse ES cells and adult organs
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF Affymetrix probe set identifier
VALUE MAS5 signal intensity
DETECTION Present Marginal or Absent calls based on MAS5
P-VALUE P-value of detection call

Data table
ID_REF VALUE DETECTION P-VALUE
AFFX-BioB-5_at 819.3 P 0.000857
AFFX-BioB-M_at 998.4 P 0.000081
AFFX-BioB-3_at 493.5 P 0.000224
AFFX-BioC-5_at 2361.1 P 0.000070
AFFX-BioC-3_at 2885.8 P 0.000044
AFFX-BioDn-5_at 4523.0 P 0.000044
AFFX-BioDn-3_at 10212.7 P 0.000052
AFFX-CreX-5_at 26694.2 P 0.000052
AFFX-CreX-3_at 29337.4 P 0.000044
AFFX-DapX-5_at 54.5 A 0.396920
AFFX-DapX-M_at 59.4 A 0.275129
AFFX-DapX-3_at 29.9 A 0.712257
AFFX-LysX-5_at 5.3 A 0.724854
AFFX-LysX-M_at 12.6 A 0.852061
AFFX-LysX-3_at 73.8 A 0.131361
AFFX-PheX-5_at 13.9 A 0.631562
AFFX-PheX-M_at 5.0 A 0.937071
AFFX-PheX-3_at 43.2 A 0.659339
AFFX-ThrX-5_at 16.4 A 0.617401
AFFX-ThrX-M_at 10.9 A 0.724854

Total number of rows: 45101

Table truncated, full table size 1244 Kbytes.




Supplementary file Size Download File type/resource
GSM185509.CEL.gz 3.8 Mb (ftp)(http) CEL

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