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Sample GSM185510 Query DataSets for GSM185510
Status Public on Jul 28, 2007
Title Affymetrix Gene Expression profiling of adult mouse heart
Sample type RNA
 
Source name Total RNA from adult mouse heart cells
Organism Mus musculus
Characteristics sample of mouse adult tissue was dissected out from 10-12 week old wild-type BL6 female mouse
Extracted molecule total RNA
Extraction protocol Total RNA from each mouse tissue was extracted using Trizol. reagent (Invitrogen, Carlsbad, CA) and further purified using RNeasy Mini Kit (Qiagen, Valencia, CA) according to manufacturer recommendations
Label biotin
Label protocol Purified total RNA was submitted to UCSD Cancer Center Microarray Resource for GeneChip RNA Expression Analysis. Biotin labeling protocol.
 
Hybridization protocol Affymetrix total RNA hybridization protocol
Scan protocol Affymetrix scan protocol
Description Total RNA from adult mouse 10-12 weeks
Data processing Data processed using Affymetrix GCOS Software
 
Submission date Apr 27, 2007
Last update date Aug 28, 2018
Contact name Bing Ren
E-mail(s) biren@ucsd.edu
Organization name Ludwig Institute for Cancer Research
Department Department of Cellular and Molecular Medicine
Lab Laboratory of Gene Regulation
Street address 9500 Gilman Drive
City La Jolla
State/province CA
ZIP/Postal code 92093-0653
Country USA
 
Platform ID GPL1261
Series (1)
GSE7688 Genome-wide mapping and analysis of active promoters in mouse ES cells and adult organs
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF Affymetrix probe set identifier
VALUE MAS5-calculated Signal intensity
DETECTION Present Marginal Absent calls based on MAS5
P-VALUE Significance level of detection call

Data table
ID_REF VALUE DETECTION P-VALUE
AFFX-BioB-5_at 1492.1 P 0.000446
AFFX-BioB-M_at 2022.1 P 0.000060
AFFX-BioB-3_at 1244.1 P 0.000340
AFFX-BioC-5_at 4863.0 P 0.000060
AFFX-BioC-3_at 4651.5 P 0.000052
AFFX-BioDn-5_at 9081.4 P 0.000044
AFFX-BioDn-3_at 22156.1 P 0.000044
AFFX-CreX-5_at 55439.7 P 0.000052
AFFX-CreX-3_at 58101.3 P 0.000044
AFFX-DapX-5_at 32.6 A 0.574038
AFFX-DapX-M_at 27.6 A 0.574038
AFFX-DapX-3_at 37.0 A 0.699394
AFFX-LysX-5_at 112.5 A 0.239063
AFFX-LysX-M_at 77.0 A 0.659339
AFFX-LysX-3_at 71.3 A 0.470241
AFFX-PheX-5_at 111.1 A 0.559354
AFFX-PheX-M_at 10.9 A 0.876428
AFFX-PheX-3_at 127.2 A 0.382599
AFFX-ThrX-5_at 15.7 A 0.921998
AFFX-ThrX-M_at 16.1 A 0.772364

Total number of rows: 45101

Table truncated, full table size 1242 Kbytes.




Supplementary file Size Download File type/resource
GSM185510.CEL.gz 3.5 Mb (ftp)(http) CEL

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