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Sample GSM186523 Query DataSets for GSM186523
Status Public on May 01, 2008
Title CD4+ cells IL1RN knockout 1 month rep1
Sample type RNA
Source name Mouse spleen at 1 month
Organism Mus musculus
Characteristics Male wild-type BALB/c
Extracted molecule total RNA
Extraction protocol Trizol
Label Biotin
Label protocol Standard Affymetrix protocol
Hybridization protocol Standard Affymetrix protocol with Fluidics Station 450
Scan protocol Standard Affymetrix protocol with GeneChip Scanner 3000
Description Gene expression data
Data processing The data were analyzed with Expressiojn Console 1.1 using default MAS5 method. The target intensity was 500.
Submission date May 02, 2007
Last update date Aug 28, 2018
Contact name Jian Yan
Phone 901-448-7830
Organization name University of Tennessee Health Science Center
Department Orthopedics Surgery
Lab Weikuan Gu
Street address 956 Court Ave
City Memphis
State/province TN
ZIP/Postal code 38163
Country USA
Platform ID GPL1261
Series (1)
GSE7705 Microarray analysis of CD4+T cells in murine arthritis
Reanalyzed by GSE119085

Data table header descriptions
VALUE MAS5-calculated signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P) , absent (A) , or marginal (M)
DETECTION P-VALUE P value that indicates the significance levell of the detection call

Data table
AFFX-BioB-5_at 397.1301 P 0.000146581
AFFX-BioB-M_at 596.515 P 4.43E-05
AFFX-BioB-3_at 385.7321 P 7.01E-05
AFFX-BioC-5_at 1328.859 P 5.17E-05
AFFX-BioC-3_at 1954.809 P 4.43E-05
AFFX-BioDn-5_at 3054.945 P 4.43E-05
AFFX-BioDn-3_at 5544.614 P 6.02E-05
AFFX-CreX-5_at 15432.58 P 5.17E-05
AFFX-CreX-3_at 19728.18 P 4.43E-05
AFFX-DapX-5_at 26.86185 A 0.1235723
AFFX-DapX-M_at 6.799428 A 0.6993936
AFFX-DapX-3_at 4.605562 A 0.8978546
AFFX-LysX-5_at 8.975698 A 0.6455594
AFFX-LysX-M_at 35.81295 A 0.4406464
AFFX-LysX-3_at 32.67318 A 0.1952664
AFFX-PheX-5_at 1.176497 A 0.997133
AFFX-PheX-M_at 1.285899 A 0.9931294
AFFX-PheX-3_at 24.35059 A 0.3006063
AFFX-ThrX-5_at 13.41805 A 0.6315623
AFFX-ThrX-M_at 3.805367 A 0.686292

Total number of rows: 45101

Table truncated, full table size 1424 Kbytes.

Supplementary file Size Download File type/resource
GSM186523.CEL.gz 3.5 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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