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GEO accession:
Sample GSM186523
Query DataSets for GSM186523
Status
Public on May 01, 2008
Title
CD4+ cells IL1RN knockout 1 month rep1
Sample type
RNA
Source name
Mouse spleen at 1 month
Organism
Mus musculus
Characteristics
Male wild-type BALB/c
Extracted molecule
total RNA
Extraction protocol
Trizol
Label
Biotin
Label protocol
Standard Affymetrix protocol
Hybridization protocol
Standard Affymetrix protocol with Fluidics Station 450
Scan protocol
Standard Affymetrix protocol with GeneChip Scanner 3000
Description
Gene expression data
Data processing
The data were analyzed with Expressiojn Console 1.1 using default MAS5 method. The target intensity was 500.
Submission date
May 02, 2007
Last update date
Aug 28, 2018
Contact name
Jian Yan
E-mail(s)
jyan1@utmem.edu
Phone
901-448-7830
Organization name
University of Tennessee Health Science Center
Department
Orthopedics Surgery
Lab
Weikuan Gu
Street address
956 Court Ave
City
Memphis
State/province
TN
ZIP/Postal code
38163
Country
USA
Platform ID
GPL1261
Series (1)
GSE7705
Microarray analysis of CD4+T cells in murine arthritis
Relations
Reanalyzed by
GSE119085
Data table header descriptions
ID_REF
VALUE
MAS5-calculated signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P) , absent (A) , or marginal (M)
DETECTION P-VALUE
P value that indicates the significance levell of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
397.1301
P
0.000146581
AFFX-BioB-M_at
596.515
P
4.43E-05
AFFX-BioB-3_at
385.7321
P
7.01E-05
AFFX-BioC-5_at
1328.859
P
5.17E-05
AFFX-BioC-3_at
1954.809
P
4.43E-05
AFFX-BioDn-5_at
3054.945
P
4.43E-05
AFFX-BioDn-3_at
5544.614
P
6.02E-05
AFFX-CreX-5_at
15432.58
P
5.17E-05
AFFX-CreX-3_at
19728.18
P
4.43E-05
AFFX-DapX-5_at
26.86185
A
0.1235723
AFFX-DapX-M_at
6.799428
A
0.6993936
AFFX-DapX-3_at
4.605562
A
0.8978546
AFFX-LysX-5_at
8.975698
A
0.6455594
AFFX-LysX-M_at
35.81295
A
0.4406464
AFFX-LysX-3_at
32.67318
A
0.1952664
AFFX-PheX-5_at
1.176497
A
0.997133
AFFX-PheX-M_at
1.285899
A
0.9931294
AFFX-PheX-3_at
24.35059
A
0.3006063
AFFX-ThrX-5_at
13.41805
A
0.6315623
AFFX-ThrX-M_at
3.805367
A
0.686292
Total number of rows:
45101
Table truncated, full table size
1424 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM186523.CEL.gz
3.5 Mb
(ftp)
(http)
CEL
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