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GEO accession:
Sample GSM186524
Query DataSets for GSM186524
Status
Public on May 01, 2008
Title
CD4+ cells IL1RN knockout 1 month rep2
Sample type
RNA
Source name
Mouse spleen at 1 month
Organism
Mus musculus
Characteristics
Male wild-type BALB/c
Extracted molecule
total RNA
Extraction protocol
Trizol
Label
Biotin
Label protocol
Standard Affymetrix protocol
Hybridization protocol
Standard Affymetrix protocol with Fluidics Station 450
Scan protocol
Standard Affymetrix protocol with GeneChip Scanner 3000
Description
Gene expression data
Data processing
The data were analyzed with Expressiojn Console 1.1 using default MAS5 method. The target intensity was 500.
Submission date
May 02, 2007
Last update date
Aug 28, 2018
Contact name
Jian Yan
E-mail(s)
jyan1@utmem.edu
Phone
901-448-7830
Organization name
University of Tennessee Health Science Center
Department
Orthopedics Surgery
Lab
Weikuan Gu
Street address
956 Court Ave
City
Memphis
State/province
TN
ZIP/Postal code
38163
Country
USA
Platform ID
GPL1261
Series (1)
GSE7705
Microarray analysis of CD4+T cells in murine arthritis
Relations
Reanalyzed by
GSE119085
Data table header descriptions
ID_REF
VALUE
MAS5-calculated signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P) , absent (A) , or marginal (M)
DETECTION P-VALUE
P value that indicates the significance levell of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
415.6956
P
0.000169227
AFFX-BioB-M_at
577.6162
P
5.17E-05
AFFX-BioB-3_at
395.6358
P
5.17E-05
AFFX-BioC-5_at
1344.575
P
6.02E-05
AFFX-BioC-3_at
1732.299
P
5.17E-05
AFFX-BioDn-5_at
2598.658
P
4.43E-05
AFFX-BioDn-3_at
4695.503
P
4.43E-05
AFFX-CreX-5_at
15677.75
P
4.43E-05
AFFX-CreX-3_at
22722.6
P
4.43E-05
AFFX-DapX-5_at
53.39984
M
0.05844382
AFFX-DapX-M_at
12.37119
A
0.7492043
AFFX-DapX-3_at
21.77596
A
0.6455473
AFFX-LysX-5_at
13.98607
A
0.5148901
AFFX-LysX-M_at
5.241353
A
0.916408
AFFX-LysX-3_at
28.44721
A
0.2877431
AFFX-PheX-5_at
5.511847
A
0.8910615
AFFX-PheX-M_at
2.121356
A
0.9886156
AFFX-PheX-3_at
9.469807
A
0.8978546
AFFX-ThrX-5_at
4.369775
A
0.945802
AFFX-ThrX-M_at
9.1932
A
0.7609373
Total number of rows:
45101
Table truncated, full table size
1422 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM186524.CEL.gz
3.2 Mb
(ftp)
(http)
CEL
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