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Sample GSM186524 Query DataSets for GSM186524
Status Public on May 01, 2008
Title CD4+ cells IL1RN knockout 1 month rep2
Sample type RNA
Source name Mouse spleen at 1 month
Organism Mus musculus
Characteristics Male wild-type BALB/c
Extracted molecule total RNA
Extraction protocol Trizol
Label Biotin
Label protocol Standard Affymetrix protocol
Hybridization protocol Standard Affymetrix protocol with Fluidics Station 450
Scan protocol Standard Affymetrix protocol with GeneChip Scanner 3000
Description Gene expression data
Data processing The data were analyzed with Expressiojn Console 1.1 using default MAS5 method. The target intensity was 500.
Submission date May 02, 2007
Last update date Aug 28, 2018
Contact name Jian Yan
Phone 901-448-7830
Organization name University of Tennessee Health Science Center
Department Orthopedics Surgery
Lab Weikuan Gu
Street address 956 Court Ave
City Memphis
State/province TN
ZIP/Postal code 38163
Country USA
Platform ID GPL1261
Series (1)
GSE7705 Microarray analysis of CD4+T cells in murine arthritis
Reanalyzed by GSE119085

Data table header descriptions
VALUE MAS5-calculated signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P) , absent (A) , or marginal (M)
DETECTION P-VALUE P value that indicates the significance levell of the detection call

Data table
AFFX-BioB-5_at 415.6956 P 0.000169227
AFFX-BioB-M_at 577.6162 P 5.17E-05
AFFX-BioB-3_at 395.6358 P 5.17E-05
AFFX-BioC-5_at 1344.575 P 6.02E-05
AFFX-BioC-3_at 1732.299 P 5.17E-05
AFFX-BioDn-5_at 2598.658 P 4.43E-05
AFFX-BioDn-3_at 4695.503 P 4.43E-05
AFFX-CreX-5_at 15677.75 P 4.43E-05
AFFX-CreX-3_at 22722.6 P 4.43E-05
AFFX-DapX-5_at 53.39984 M 0.05844382
AFFX-DapX-M_at 12.37119 A 0.7492043
AFFX-DapX-3_at 21.77596 A 0.6455473
AFFX-LysX-5_at 13.98607 A 0.5148901
AFFX-LysX-M_at 5.241353 A 0.916408
AFFX-LysX-3_at 28.44721 A 0.2877431
AFFX-PheX-5_at 5.511847 A 0.8910615
AFFX-PheX-M_at 2.121356 A 0.9886156
AFFX-PheX-3_at 9.469807 A 0.8978546
AFFX-ThrX-5_at 4.369775 A 0.945802
AFFX-ThrX-M_at 9.1932 A 0.7609373

Total number of rows: 45101

Table truncated, full table size 1422 Kbytes.

Supplementary file Size Download File type/resource
GSM186524.CEL.gz 3.2 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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