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Sample GSM186525 Query DataSets for GSM186525
Status Public on May 01, 2008
Title CD4+ cells IL1RN knockout 4 month rep1
Sample type RNA
Source name Mouse spleen at 4 month
Organism Mus musculus
Characteristics Male wild-type BALB/c
Extracted molecule total RNA
Extraction protocol Trizol
Label Biotin
Label protocol Standard Affymetrix protocol
Hybridization protocol Standard Affymetrix protocol with Fluidics Station 450
Scan protocol Standard Affymetrix protocol with GeneChip Scanner 3000
Description Gene expression data
Data processing The data were analyzed with Expressiojn Console 1.1 using default MAS5 method. The target intensity was 500.
Submission date May 02, 2007
Last update date Aug 28, 2018
Contact name Jian Yan
Phone 901-448-7830
Organization name University of Tennessee Health Science Center
Department Orthopedics Surgery
Lab Weikuan Gu
Street address 956 Court Ave
City Memphis
State/province TN
ZIP/Postal code 38163
Country USA
Platform ID GPL1261
Series (1)
GSE7705 Microarray analysis of CD4+T cells in murine arthritis
Reanalyzed by GSE119085

Data table header descriptions
VALUE MAS5-calculated signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P) , absent (A) , or marginal (M)
DETECTION P-VALUE P value that indicates the significance levell of the detection call

Data table
AFFX-BioB-5_at 601.1736 P 0.000296708
AFFX-BioB-M_at 1021.934 P 4.43E-05
AFFX-BioB-3_at 583.4372 P 5.17E-05
AFFX-BioC-5_at 2082.119 P 4.43E-05
AFFX-BioC-3_at 2738.898 P 4.43E-05
AFFX-BioDn-5_at 4611.107 P 4.43E-05
AFFX-BioDn-3_at 6946.072 P 4.43E-05
AFFX-CreX-5_at 20856.01 P 5.17E-05
AFFX-CreX-3_at 26129.07 P 4.43E-05
AFFX-DapX-5_at 30.89263 P 0.02611102
AFFX-DapX-M_at 28.0195 A 0.313723
AFFX-DapX-3_at 14.40215 A 0.8246717
AFFX-LysX-5_at 3.602153 A 0.7834759
AFFX-LysX-M_at 39.74247 A 0.2507957
AFFX-LysX-3_at 35.56029 A 0.2877265
AFFX-PheX-5_at 1.338885 A 0.9043717
AFFX-PheX-M_at 1.546723 A 0.9944355
AFFX-PheX-3_at 21.72314 A 0.4554125
AFFX-ThrX-5_at 4.13169 A 0.9715427
AFFX-ThrX-M_at 31.94221 A 0.1753282

Total number of rows: 45101

Table truncated, full table size 1427 Kbytes.

Supplementary file Size Download File type/resource
GSM186525.CEL.gz 3.3 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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