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Sample GSM186551 Query DataSets for GSM186551
Status Public on May 01, 2008
Title CD4+ cells IL1RN knockout 4 month rep2
Sample type RNA
Source name Mouse spleen at 4 month
Organism Mus musculus
Characteristics Male wild-type BALB/c
Extracted molecule total RNA
Extraction protocol Trizol
Label Biotin
Label protocol Standard Affymetrix protocol
Hybridization protocol Standard Affymetrix protocol with Fluidics Station 450
Scan protocol Standard Affymetrix protocol with GeneChip Scanner 3000
Description Gene expression data
Data processing The data were analyzed with Expressiojn Console 1.1 using default MAS5 method. The target intensity was 500.
Submission date May 02, 2007
Last update date Aug 28, 2018
Contact name Jian Yan
Phone 901-448-7830
Organization name University of Tennessee Health Science Center
Department Orthopedics Surgery
Lab Weikuan Gu
Street address 956 Court Ave
City Memphis
State/province TN
ZIP/Postal code 38163
Country USA
Platform ID GPL1261
Series (1)
GSE7705 Microarray analysis of CD4+T cells in murine arthritis
Reanalyzed by GSE119085

Data table header descriptions
VALUE MAS5-calculated signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P) , absent (A) , or marginal (M)
DETECTION P-VALUE P value that indicates the significance levell of the detection call

Data table
AFFX-BioB-5_at 561.3461 P 0.000296708
AFFX-BioB-M_at 723.8322 P 4.43E-05
AFFX-BioB-3_at 451.6592 P 7.01E-05
AFFX-BioC-5_at 1566.152 P 4.43E-05
AFFX-BioC-3_at 2104.309 P 4.43E-05
AFFX-BioDn-5_at 3431.562 P 4.43E-05
AFFX-BioDn-3_at 5952.994 P 5.17E-05
AFFX-CreX-5_at 16468.93 P 5.17E-05
AFFX-CreX-3_at 21289.49 P 4.43E-05
AFFX-DapX-5_at 8.19363 A 0.5593536
AFFX-DapX-M_at 15.48898 A 0.7492043
AFFX-DapX-3_at 2.907065 A 0.9979774
AFFX-LysX-5_at 4.548528 A 0.6994095
AFFX-LysX-M_at 40.72544 A 0.2877431
AFFX-LysX-3_at 17.41971 A 0.1851306
AFFX-PheX-5_at 6.369532 A 0.8246717
AFFX-PheX-M_at 3.038708 A 0.9817194
AFFX-PheX-3_at 93.09827 A 0.09566692
AFFX-ThrX-5_at 27.91708 A 0.2507957
AFFX-ThrX-M_at 18.72795 A 0.3270654

Total number of rows: 45101

Table truncated, full table size 1426 Kbytes.

Supplementary file Size Download File type/resource
GSM186551.CEL.gz 3.4 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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