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GEO accession:
Sample GSM186551
Query DataSets for GSM186551
Status
Public on May 01, 2008
Title
CD4+ cells IL1RN knockout 4 month rep2
Sample type
RNA
Source name
Mouse spleen at 4 month
Organism
Mus musculus
Characteristics
Male wild-type BALB/c
Extracted molecule
total RNA
Extraction protocol
Trizol
Label
Biotin
Label protocol
Standard Affymetrix protocol
Hybridization protocol
Standard Affymetrix protocol with Fluidics Station 450
Scan protocol
Standard Affymetrix protocol with GeneChip Scanner 3000
Description
Gene expression data
Data processing
The data were analyzed with Expressiojn Console 1.1 using default MAS5 method. The target intensity was 500.
Submission date
May 02, 2007
Last update date
Aug 28, 2018
Contact name
Jian Yan
E-mail(s)
jyan1@utmem.edu
Phone
901-448-7830
Organization name
University of Tennessee Health Science Center
Department
Orthopedics Surgery
Lab
Weikuan Gu
Street address
956 Court Ave
City
Memphis
State/province
TN
ZIP/Postal code
38163
Country
USA
Platform ID
GPL1261
Series (1)
GSE7705
Microarray analysis of CD4+T cells in murine arthritis
Relations
Reanalyzed by
GSE119085
Data table header descriptions
ID_REF
VALUE
MAS5-calculated signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P) , absent (A) , or marginal (M)
DETECTION P-VALUE
P value that indicates the significance levell of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
561.3461
P
0.000296708
AFFX-BioB-M_at
723.8322
P
4.43E-05
AFFX-BioB-3_at
451.6592
P
7.01E-05
AFFX-BioC-5_at
1566.152
P
4.43E-05
AFFX-BioC-3_at
2104.309
P
4.43E-05
AFFX-BioDn-5_at
3431.562
P
4.43E-05
AFFX-BioDn-3_at
5952.994
P
5.17E-05
AFFX-CreX-5_at
16468.93
P
5.17E-05
AFFX-CreX-3_at
21289.49
P
4.43E-05
AFFX-DapX-5_at
8.19363
A
0.5593536
AFFX-DapX-M_at
15.48898
A
0.7492043
AFFX-DapX-3_at
2.907065
A
0.9979774
AFFX-LysX-5_at
4.548528
A
0.6994095
AFFX-LysX-M_at
40.72544
A
0.2877431
AFFX-LysX-3_at
17.41971
A
0.1851306
AFFX-PheX-5_at
6.369532
A
0.8246717
AFFX-PheX-M_at
3.038708
A
0.9817194
AFFX-PheX-3_at
93.09827
A
0.09566692
AFFX-ThrX-5_at
27.91708
A
0.2507957
AFFX-ThrX-M_at
18.72795
A
0.3270654
Total number of rows:
45101
Table truncated, full table size
1426 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM186551.CEL.gz
3.4 Mb
(ftp)
(http)
CEL
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