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Sample GSM186552 Query DataSets for GSM186552
Status Public on May 01, 2008
Title CD4+ cells IL1RN wild type 1 month rep1
Sample type RNA
 
Source name Mouse spleen at 1 month
Organism Mus musculus
Characteristics Male wild-type BALB/c
Extracted molecule total RNA
Extraction protocol Trizol
Label Biotin
Label protocol Standard Affymetrix protocol
 
Hybridization protocol Standard Affymetrix protocol with Fluidics Station 450
Scan protocol Standard Affymetrix protocol with GeneChip Scanner 3000
Description Gene expression data
Data processing The data were analyzed with Expressiojn Console 1.1 using default MAS5 method. The target intensity was 500.
 
Submission date May 02, 2007
Last update date Aug 28, 2018
Contact name Jian Yan
E-mail(s) jyan1@utmem.edu
Phone 901-448-7830
Organization name University of Tennessee Health Science Center
Department Orthopedics Surgery
Lab Weikuan Gu
Street address 956 Court Ave
City Memphis
State/province TN
ZIP/Postal code 38163
Country USA
 
Platform ID GPL1261
Series (1)
GSE7705 Microarray analysis of CD4+T cells in murine arthritis
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE MAS5-calculated signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P) , absent (A) , or marginal (M)
DETECTION P-VALUE P value that indicates the significance levell of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 313.5584 P 0.000445901
AFFX-BioB-M_at 477.6631 P 4.43E-05
AFFX-BioB-3_at 346.6523 P 4.43E-05
AFFX-BioC-5_at 1225.357 P 5.17E-05
AFFX-BioC-3_at 1851.489 P 4.43E-05
AFFX-BioDn-5_at 2691.233 P 4.43E-05
AFFX-BioDn-3_at 5124.619 P 7.01E-05
AFFX-CreX-5_at 14408.21 P 5.17E-05
AFFX-CreX-3_at 18561.13 P 4.43E-05
AFFX-DapX-5_at 5.402142 A 0.4113802
AFFX-DapX-M_at 7.504216 A 0.7248541
AFFX-DapX-3_at 30.41841 A 0.250777
AFFX-LysX-5_at 0.9028216 A 0.9715535
AFFX-LysX-M_at 9.095195 A 0.686277
AFFX-LysX-3_at 20.44363 A 0.1567315
AFFX-PheX-5_at 3.244986 A 0.9603392
AFFX-PheX-M_at 3.492532 A 0.973889
AFFX-PheX-3_at 14.06651 A 0.6455473
AFFX-ThrX-5_at 3.756115 A 0.9799781
AFFX-ThrX-M_at 10.02703 A 0.4851086

Total number of rows: 45101

Table truncated, full table size 1425 Kbytes.




Supplementary file Size Download File type/resource
GSM186552.CEL.gz 3.5 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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