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Sample GSM186553 Query DataSets for GSM186553
Status Public on May 01, 2008
Title CD4+ cells IL1RN wild type 1 month rep2
Sample type RNA
Source name Mouse spleen at 1 month
Organism Mus musculus
Characteristics Male wild-type BALB/c
Extracted molecule total RNA
Extraction protocol Trizol
Label Biotin
Label protocol Standard Affymetrix protocol
Hybridization protocol Standard Affymetrix protocol with Fluidics Station 450
Scan protocol Standard Affymetrix protocol with GeneChip Scanner 3000
Description Gene expression data
Data processing The data were analyzed with Expressiojn Console 1.1 using default MAS5 method. The target intensity was 500.
Submission date May 02, 2007
Last update date Aug 28, 2018
Contact name Jian Yan
Phone 901-448-7830
Organization name University of Tennessee Health Science Center
Department Orthopedics Surgery
Lab Weikuan Gu
Street address 956 Court Ave
City Memphis
State/province TN
ZIP/Postal code 38163
Country USA
Platform ID GPL1261
Series (1)
GSE7705 Microarray analysis of CD4+T cells in murine arthritis
Reanalyzed by GSE119085

Data table header descriptions
VALUE MAS5-calculated signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P) , absent (A) , or marginal (M)
DETECTION P-VALUE P value that indicates the significance levell of the detection call

Data table
AFFX-BioB-5_at 361.5724 P 0.000296708
AFFX-BioB-M_at 526.5159 P 5.17E-05
AFFX-BioB-3_at 299.0078 P 7.01E-05
AFFX-BioC-5_at 1208.813 P 5.17E-05
AFFX-BioC-3_at 1744.018 P 4.43E-05
AFFX-BioDn-5_at 2401.51 P 4.43E-05
AFFX-BioDn-3_at 4610.974 P 8.14E-05
AFFX-CreX-5_at 12485.41 P 5.17E-05
AFFX-CreX-3_at 17387.56 P 4.43E-05
AFFX-DapX-5_at 5.495392 A 0.6593388
AFFX-DapX-M_at 34.27498 A 0.3544527
AFFX-DapX-3_at 8.668747 A 0.7122569
AFFX-LysX-5_at 15.27834 A 0.5593536
AFFX-LysX-M_at 5.614184 A 0.6729205
AFFX-LysX-3_at 26.89184 A 0.08947805
AFFX-PheX-5_at 3.035437 A 0.9323215
AFFX-PheX-M_at 5.109517 A 0.8838872
AFFX-PheX-3_at 42.71752 A 0.1851306
AFFX-ThrX-5_at 3.121561 A 0.9817194
AFFX-ThrX-M_at 20.74998 A 0.3270654

Total number of rows: 45101

Table truncated, full table size 1425 Kbytes.

Supplementary file Size Download File type/resource
GSM186553.CEL.gz 3.5 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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