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Sample GSM186554 Query DataSets for GSM186554
Status Public on May 01, 2008
Title CD4+ cells IL1RN wild type 1 month rep3
Sample type RNA
Source name Mouse spleen at 1 month
Organism Mus musculus
Characteristics Male wild-type BALB/c
Extracted molecule total RNA
Extraction protocol Trizol
Label Biotin
Label protocol Standard Affymetrix protocol
Hybridization protocol Standard Affymetrix protocol with Fluidics Station 450
Scan protocol Standard Affymetrix protocol with GeneChip Scanner 3000
Description Gene expression data
Data processing The data were analyzed with Expressiojn Console 1.1 using default MAS5 method. The target intensity was 500.
Submission date May 02, 2007
Last update date Aug 28, 2018
Contact name Jian Yan
Phone 901-448-7830
Organization name University of Tennessee Health Science Center
Department Orthopedics Surgery
Lab Weikuan Gu
Street address 956 Court Ave
City Memphis
State/province TN
ZIP/Postal code 38163
Country USA
Platform ID GPL1261
Series (1)
GSE7705 Microarray analysis of CD4+T cells in murine arthritis
Reanalyzed by GSE119085

Data table header descriptions
VALUE MAS5-calculated signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P) , absent (A) , or marginal (M)
DETECTION P-VALUE P value that indicates the significance levell of the detection call

Data table
AFFX-BioB-5_at 489.7979 P 0.000195116
AFFX-BioB-M_at 765.9018 P 4.43E-05
AFFX-BioB-3_at 458.2923 P 4.43E-05
AFFX-BioC-5_at 1656.685 P 5.17E-05
AFFX-BioC-3_at 2326.488 P 4.43E-05
AFFX-BioDn-5_at 3407.886 P 4.43E-05
AFFX-BioDn-3_at 6918.707 P 6.02E-05
AFFX-CreX-5_at 19165.64 P 5.17E-05
AFFX-CreX-3_at 22923.38 P 4.43E-05
AFFX-DapX-5_at 39.55391 A 0.3969195
AFFX-DapX-M_at 5.174566 A 0.6729205
AFFX-DapX-3_at 29.90544 A 0.6993936
AFFX-LysX-5_at 5.695018 A 0.4406361
AFFX-LysX-M_at 49.78918 A 0.3270795
AFFX-LysX-3_at 2.882755 A 0.3270795
AFFX-PheX-5_at 1.590192 A 0.9896833
AFFX-PheX-M_at 4.867942 A 0.7248541
AFFX-PheX-3_at 46.35509 A 0.2628266
AFFX-ThrX-5_at 24.24066 A 0.5445875
AFFX-ThrX-M_at 2.999748 A 0.957038

Total number of rows: 45101

Table truncated, full table size 1423 Kbytes.

Supplementary file Size Download File type/resource
GSM186554.CEL.gz 3.4 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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