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Sample GSM1866514 Query DataSets for GSM1866514
Status Public on Jun 30, 2016
Title Unaffected Relative 3
Sample type genomic
 
Channel 1
Source name blood leukocytes, unaffected
Organism Homo sapiens
Characteristics disease status: unaffected
cell type: blood leukocytes
gender: male
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated using the FlexiGene DNA kit as per manufacturer's recommendations.
Label Cy5
Label protocol As per manufacturer's instructions. Protocol: Agilent Oligonucleotide Array-Based CGH for Genomic DNA Analysis - Enzymatic Labeling for Blood Cells or Tissues - Version 6,3, October 2010.
 
Channel 2
Source name Human reference DNA (Agilent 5190-4371)
Organism Homo sapiens
Characteristics gender: female
sample type: reference
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated using the FlexiGene DNA kit as per manufacturer's recommendations.
Label Cy3
Label protocol As per manufacturer's instructions. Protocol: Agilent Oligonucleotide Array-Based CGH for Genomic DNA Analysis - Enzymatic Labeling for Blood Cells or Tissues - Version 6,3, October 2010.
 
 
Hybridization protocol As per manufacturer's instructions. Protocol: Agilent Oligonucleotide Array-Based CGH for Genomic DNA Analysis - Enzymatic Labeling for Blood Cells or Tissues - Version 6,3, October 2010.
Scan protocol Agilent Feature Extraction V 11.5.1.
Description Unaffected 3
Data processing Agilent CytoGenomics 3.0.1.1 software. Genome build hg19. Default Analysis Method - CGH+SNP v2. Normalization: GC correction and Diploid Peak Centralization.
 
Submission date Sep 01, 2015
Last update date Jun 30, 2016
Contact name Anthony J. Aldave
E-mail(s) Aldave@jsei.ucla.edu
Organization name Stein Eye Institute, UCLA
Department Ophthalmology
Lab Cornea Genetics Laboratory
Street address 200 Stein Plaza DSERC 3-143
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Platform ID GPL20879
Series (1)
GSE72617 Identification of Potentially Pathogenic Variants in the Posterior Polymorphous Corneal Dystrophy 1 Locus

Data table header descriptions
ID_REF
VALUE Mean Log2 Ratio (test/reference)

Data table
ID_REF VALUE
A_18_P10003754 -0.09832953
A_18_P10006640 0.072258726
A_16_P00007064 -0.31278157
A_18_P10020844 0.13984552
A_18_P10026487 -0.17750084
A_16_P00011128 -0.02472172
A_16_P00011351 -0.20444353
A_16_P00013104 -0.17788413
A_14_P128013 0.0790429
A_16_P00016149 -0.1524474
A_14_P127263 -0.024900122
A_16_P00017737 0.1483466
A_16_P00022293 0.0633214
A_16_P15048277 -0.15420724
A_16_P15049024 -0.23349087
A_16_P35052127 0.11690893
A_14_P137506 -0.038336568
A_16_P15052592 -0.20325366
A_14_P130600 -0.17029051
A_16_P15059239 -0.23259072

Total number of rows: 55076

Table truncated, full table size 1431 Kbytes.




Supplementary file Size Download File type/resource
GSM1866514_Unaffected_3.txt.gz 17.6 Mb (ftp)(http) TXT
Raw data provided as supplementary file
Processed data included within Sample table

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